Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCCCTGTCAAAACTTATCCAAGATCGCTGATGCTTCCAAAGGAGTTTGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaattagtacctcaatgtttgacctgtaattagttctaatgaatacactaaccattcttcatttcctcaataattttccaccaaaccatgggaaatgttgattttcatgcgcag

Basic information

species Oryza sativa
transcript LOC_Os05g24550.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 5
GATGTCCCTGTCAAAACTTATCCAAGATCGCTGATGCTTCCAAAGGAGTTTGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaattagt-acctcaatg--tttgacctgta-attagttctaatgaatacactaaccattcttcatttcctcaataattttccaccaaaccatgggaaatgttgattttcatgcgcag
 |||| ||||||||||||||| ||||||| |||   |||||||| |||||||| || || ||||||||||| |  || | ||||||||||| ||||||||||| ||| | || || | |||  ||  ||| | ||||| ||   || || |   | | |  |    |  ||||||| |   | | |||      || | |||  ||                   
AATGTTCCTGTCAAAACTTATTCAAGATCACTGGAACTTCCAAAAGAGTTTGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttatttggttaactcggtgcattttagctgtatatctattttagt---tgc-ccgatggatactcatttcttgtttgaattttt---caatcctggataac------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688861|gb|CB685136.1|CB685136
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58688070|gb|CK076757.1|CK076757
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|27578059|gb|CB000754.1|CB000754
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29686789|gb|CB683064.1|CB683064
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|33798896|gb|CF325305.1|CF325305
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58693640|gb|CK082327.1|CK082327
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|33806214|gb|CF328987.1|CF328987
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CATGGTCACAGTGTAACACAATGGGGACCATACTTG                         ATCAG
genomic: CATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29640250|gb|CB645259.1|CB645259
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58609130|gb|CK037163.1|CK037163
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|66923450|gb|CX110298.1|CX110298
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29656220|gb|CB652495.1|CB652495
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG