1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGTCGGTGTGATCTTAGGCACTGGCTCAAACGCCGCATATCTTGAGAAGGCAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATGgtaaggattagatatttctcaaccgaagtaactggcatgtactgcatagaatcatctactatctgtatttggatttctttctcactgtactttctgaatttcag
species | Oryza sativa |
transcript | LOC_Os05g09500.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATG GTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACAEST: gi|33681408|gb|CF309647.1|CF309647
genomic: CAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATGgtaaggatta ... tgaatttcagGTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACA
EST: AGTTACCAAAATCAGGAAACATG GTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACAEST: gi|29672516|gb|CB668791.1|CB668791
genomic: AGTTACCAAAATCAGGAAACATGgtaaggatta ... tgaatttcagGTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACA
EST: CAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATG GTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACAEST: gi|29672557|gb|CB668832.1|CB668832
genomic: CAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATGgtaaggatta ... tgaatttcagGTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACA
EST: CAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCACGAAACATG GTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACAEST: gi|29669106|gb|CB665381.1|CB665381
genomic: CAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATGgtaaggatta ... tgaatttcagGTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACA
EST: TCAGGAAACATG G-TATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACA
genomic: TCAGGAAACATGgtaaggatta ... tgaatttcagGTTATTAATACAGAATGGGGTAACTTCTCCTCATCCTGTCTTCCAATAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGGTGTGATCTTAGGCACTGGCTCAAACGCCGCATATCTTGAGAAGGCAAATGCTATCCCTAAGTTGGAAGGCGAGTTACCAAAATCAGGAAACATGgtaaggattagatatttctcaaccgaagtaactggcatgtactgcatagaatcatctactatctgtatttggatttctttctcactgtactttctgaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG