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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTTCAGGCCTATAGAGGAAGCCTATGACTCTTTCCAGCCAGAGGCCAAAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGgtattataacattttttatttcttacattcctttctttttgaaagatcgttacggcatgtgccatccctctttttattattattatttaaatcatgtatcatgtctttctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g03430.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88694111|gb|CI738149.1|CI738149
EST:     AAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAG                         TGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATT
genomic: AAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGgtattataac ... ctttctgcagTGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATT
EST: gi|58658984|gb|CK047664.1|CK047664
EST:     AAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAG                         TGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATT
genomic: AAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGgtattataac ... ctttctgcagTGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATT