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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTGACTCATGAGGGTGAGGAGATGATCAAAATTGGGAAGCTTAATCTAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGATgtgagtaaacttaaaattttctattcattgattaaaatataatatatctatctgatttttcaactgcccaatactacttttgatattgaattatcattgcag

Basic information

species Oryza sativa
transcript LOC_Os05g02670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g02670.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G024576_T01 (Zea mays), 5'ss of exon 4
GGAACTGACTCATGAGGGTGAGGAGATGATCAAAATTGGGAAGCTTAATCTAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGATgtgagtaaacttaaaattttctattcattgattaaaatat--aatatatctatctgatttttcaactgcccaatactacttttgatattgaattatcattgcag
|||||| |||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |  |  |||| | | ||| || ||| |||| ||  |||   ||| |||||| |||||| |     | |  |||| | | || ||||   ||||||||
GGAACTCACTCATGAGGGTGAGGAGATGATCAAGATTGGAAAGCTCAATCTTGTCGATCTAGCTGGTTCAGAAAATATATCACGCTCAGGTGCTAGAGATgtgagttacttctaaatgtccaatt-atagataaaaaaatcaaatgcttctctctgatctttcaaatttaataaagcacttgtaacatcgaatctacattgcag

upper sequence: LOC_Os05g02670.3 (Oryza sativa), 5'ss of exon 5
lower sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAACTGACTCATGAGGGTGAGGAGATGATCAAAATTGGGAAGCTTAATCTAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGATgtgagtaaac---ttaaaattttctattcattgattaaaatataata-tatct-atctgatttttcaactgcccaatactacttttgatattgaattatcattgcag
||||   ||||  || || || |||||  |||||| ||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||| |||| ||   ||||    | |  |      |||  ||  | | |  |||||| | ||| | ||   |  |  |||   |||||  |   |   ||||               
GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacctaaaacagtcaggaaccatgattttttattgacagaataatagtgtcttaccttgatgatttactaaacaatataagagtcactattttgcag---------

upper sequence: LOC_Os05g02670.3 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 5
GGAACTGACTCATGAGGGTGAGGAGATGATCAAAATTGGGAAGCTTAATCTAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGATgtgagtaaacttaaaattttctattcattgattaaaatataatatatctatctgatttttcaactgcc--caatactac-ttttgatattgaattatcattgcag
|||    ||||  ||||| ||||||||||| |||  ||| ||||||||||| || || || |||||||| || ||||| |||||||| ||||||||||| ||     ||  |||  |   |||  || | |||  | | |  || || || |||||   |  || ||   |||  |||    ||   | |  |||| ||    | 
GGAGTGTACTCCAGAGGGGGAGGAGATGATTAAATGTGGCAAGCTTAATCTTGTTGACCTTGCTGGTTCTGAGAATATTTCACGGTCTGGTGCTAGAGAGgtat---aatataacttgcgctag-cagtcattctactctggtacatgta-ctgatgcatggacggctagcaagtctatacctttgcaatatattaacacaatat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58664623|gb|CK053309.1|CK053309
EST:     TAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGAT                         GGCAGAGCGAGAGAGGCTGGGGAGATCAACAAGAGCTTGCTGACACTTGGT
genomic: TAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGATgtgagtaaac ... atcattgcagGGCAGAGCGAGAGAGGCTGGGGAGATCAACAAGAGCTTGCTGACACTTGGT