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TGTCCCAACGAACCCCAAGGGTGCAGAGAGACTAGCACCAGCTATTGTTGTGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAGgtatattttcttgctcaacatactcgtatcattttattgccaaaaatatttggaattctggaatcttatctttgtttgttatttgttcttacttttatca...
species | Oryza sativa |
transcript | LOC_Os05g01760.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAG GACCTGCCCTTCAAACCAAAGTACCTTGTTACTTTCACTGTTGGATATGCAEST: gi|13806284|gb|AU181454.1|AU181454
genomic: TGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAGgtatattttc ... gcatatgtagGACCTGCCCTTCAAACCAAAGTACCTTGTTACTTTCACTGTTGGATATGCA
EST: TGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAG GACCTGCCCTTCAAACCAAAGTACCTTGTTACTTTCACTGTTGGATATGCAEST: gi|58671342|gb|CK060028.1|CK060028
genomic: TGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAGgtatattttc ... gcatatgtagGACCTGCCCTTCAAACCAAAGTACCTTGTTACTTTCACTGTTGGATATGCA
EST: TGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAG GACCTGCCCTTCAAACCAAAGTACCTTGTTACTTTCACTGTTGGATATGCA
genomic: TGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAGgtatattttc ... gcatatgtagGACCTGCCCTTCAAACCAAAGTACCTTGTTACTTTCACTGTTGGATATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCCCAACGAACCCCAAGGGTGCAGAGAGACTAGCACCAGCTATTGTTGTGCCAGAAACTGACTTCCATTTGCGCAGGTTATGGGGAGAACCAAGTGAGgtatattttcttgctcaacatactcgtatcattttattgccaaaaatatttggaattctggaatcttatctttgtttgttatttgttcttacttttatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata