1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GAAATGTGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAgtaatacacttatgcccgttgtttttctgcattgccattgttgcttcatattacacaatctagtgttgtttatttctcttgtttttggcag
species | Oryza sativa |
transcript | LOC_Os04g59624.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCA GTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGCEST: gi|33678103|gb|CF306342.1|CF306342
genomic: TGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAgtaatacact ... tttttggcagGTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGC
EST: TGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCA GTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGCEST: gi|58680097|gb|CK068784.1|CK068784
genomic: TGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAgtaatacact ... tttttggcagGTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGC
EST: GGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCA GTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGC
genomic: GGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAgtaatacact ... tttttggcagGTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGTGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAgtaatacacttatgcccgttgtttttctgcattgccattgttgcttcatattacacaatctagtgttgtttatttctcttgtttttggcag
- - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA