Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcag

Basic information

species Oryza sativa
transcript LOC_Os04g59550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G127591_T03 (Zea mays), 5'ss of exon 5
CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcag
| |||| || || |||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||||          |  |  | |  |  ||  | |     | |||||||| ||||  ||   |  |    ||    || ||
CCTAGGTTCGGGGGTGCTTGCGTTCTGCCTTAACTTCTCCATCTTCTACGTCATCCATTCAACAACAGCAGTGACGTTCAACGTTGCAGGCAACCTTAAAgtaa---------gatccctaccctactccctccgc---tgctgctcga-cattgattgacatagcatcttaaaatgtag

upper sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA14G23570.1 (Glycine max), 5'ss of exon 4
CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggcctatgctt-tgttcttttcatatattctgctcgatcattt-cttagaactgatcattgcgctg-cag-----------------
  |  ||||||||||  | || || ||||| |||||||||||||| || ||||| ||||| |||||||| || || || ||||||||||| ||||| || ||     | ||  |||  |  |   || |     |   ||   |  | | || |    || |   | || |||  | |  |||                 
TTTCAGCTCTGGAGTTTTGGCGTTCTGCCTTAACTTCTCCATTTTTTATGTGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAGgtgagttctatcaggcagaatcaaatgcttcaagctactacattatttggtcttaaattttgggttcatgattttgttttcagttggttcattcatgtat

upper sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 5
CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggccta--tgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctg-cag-----------------
  |  |||| |||||  | ||||||||||| |||||||||||||| || ||||| ||||| |||||||| || || || ||||||||||| ||||| || ||     | ||  |||  |  ||  |       ||||          |   |   |  || |   | || |||  | |  |||                 
TTTCAGCTCAGGAGTTTTGGCATTTTGCCTTAACTTCTCCATTTTTTATGTGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAGgtgagttctatcaggctgaaatgaatcaaatgcttcaagctactatattagttggtctttcgtgttcatgattttgttttcagttggttcattcatgtat

upper sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 4
CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggc-----------ctatgctttgttcttt-tcatatattctgctcgatcatttcttagaactgatcattgcgctgcag----------
  |  | ||||| ||  | || || ||||| ||||||||||| ||||| ||||| || ||||| ||||| || || || ||||||||||| || || || ||     || ||               ||      |||||| | | ||| ||| |  |   | | ||  || ||   |||||    || | |          
TTTCAGTTCTGGGGTTTTGGCTTTCTGCCTCAACTTCTCCATCTTCTATGTGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctcccttaaatagaaaccatctctgaatactgttctctataatacatt-tattgatttaattgctataatgaatcatcatcct-cggccatcctttt

upper sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S6_175V6.1 (Physcomitrella patens), 5'ss of exon 5
CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggcctatgctttgttcttttcatatattc-tgctcgat---catttcttagaactgatcattgcgc-tgcag-----------------
 | |  ||||||||||   || ||||| || ||||||||||| |||||||| || ||| |||| || || ||||||||||| || || || ||| ||||||||   |||  |||   ||     || |  ||  | ||||   |||  | |    |||| | | |   || || | ||  ||||                  
AACACTCTCTGGAGTGTCCGCTTTTTGTCTCAACTTCTCCATCTTCTACGTCATTCATGCAACAACAGCTGTGACCTTCAACGTGGCAGGAAACATGAAAgtaa-gacctcttgctgta-ataatgctacttcaaaatatggatgcctggtggatatttatcatattagagcactccgtatgcacatgttcgttcaaatggc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88992389|gb|CI035527.1|CI035527
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|89173863|gb|CI041756.1|CI041756
EST:     TGAGCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86535753|gb|CI175959.1|CI175959
EST:     TGATCCATGCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86413586|gb|CI019171.1|CI019171
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86603288|gb|CI112048.1|CI112048
EST:     ATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: ATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88975965|gb|CI024216.1|CI024216
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86496461|gb|CI139094.1|CI139094
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88264374|gb|CI368148.1|CI368148
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88829067|gb|CI073937.1|CI073937
EST:     CTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: CTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88481468|gb|CI418739.1|CI418739
EST:     TGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218485011|gb|FG955777.1|FG955777
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAGTGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86874424|gb|CI316790.1|CI316790
EST:     ACCTTCAATGTTGCT-GCAACCTGAAA                         G-TGCTGTTGCTGTATTGGTGTCAT-GTTGATCTTCC-GAACCCTATCTCT
genomic: ACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88835713|gb|CI370818.1|CI370818
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88837594|gb|CI078954.1|CI078954
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88455420|gb|CI519441.1|CI519441
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGGTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88218577|gb|CI218426.1|CI218426
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218492784|gb|FG960986.1|FG960986
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86593965|gb|CI260194.1|CI260194
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|58608598|gb|CK036631.1|CK036631
EST:     TGATCCATGCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88992423|gb|CI035561.1|CI035561
EST:     CTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: CTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29616654|gb|CB621666.1|CB621666
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88289762|gb|CI525094.1|CI525094
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29660579|gb|CB656854.1|CB656854
EST:     TCAATGTTGCTGGCAACCTGAANAA                         GT-GCTGTTGCTGTATTGGTGTCATGGTTGATCTT
genomic: TCAATGTTGCTGGCAACCTGAA-A-gtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT
EST: gi|29660579|gb|CB656854.1|CB656854
EST:     TCAATGTTGCTGGCAACCTGAANAA                         GT-GCTGTTGCTGTATTGGTGTCATGGTTGATCTT
genomic: TCAATGTTGCTGGCAACCTGAA-A-gtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT
EST: gi|84117662|gb|CD151429.1|CD151429
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86522157|gb|CI162363.1|CI162363
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTA                       
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--Agtagcaacca ... tgcgctgc
EST: gi|88217499|gb|CI217348.1|CI217348
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|89180075|gb|CI044354.1|CI044354
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|33688357|gb|CF316596.1|CF316596
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86412562|gb|CI066967.1|CI066967
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88833625|gb|CI077106.1|CI077106
EST:     ATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: ATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87008234|gb|CI299202.1|CI299202
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88848848|gb|CI087370.1|CI087370
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATNGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88218401|gb|CI218250.1|CI218250
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88847767|gb|CI018458.1|CI018458
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88452271|gb|CI555348.1|CI555348
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29660580|gb|CB656855.1|CB656855
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88907523|gb|CI090317.1|CI090317
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87026811|gb|CI259464.1|CI259464
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|38476272|gb|CF960405.1|CF960405
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86500550|gb|CI143183.1|CI143183
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87015255|gb|CI275445.1|CI275445
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218497812|gb|FG965091.1|FG965091
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88829015|gb|CI073885.1|CI073885
EST:     AATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: AATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88834668|gb|CI077951.1|CI077951
EST:     GCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTTT
genomic: GCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86413489|gb|CI067894.1|CI067894
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|33690588|gb|CF318827.1|CF318827
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGACATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88983032|gb|CI250636.1|CI250636
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88247068|gb|CI246917.1|CI246917
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87024709|gb|CI259424.1|CI259424
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86255766|gb|CI066829.1|CI066829
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88516692|gb|CI444346.1|CI444346
EST:     TCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86418912|gb|CI053713.1|CI053713
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88997115|gb|CI389781.1|CI389781
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88513990|gb|CI441496.1|CI441496
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86428727|gb|CI075408.1|CI075408
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTGGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88996515|gb|CI260019.1|CI260019
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86503733|gb|CI146366.1|CI146366
EST:     TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCCGGAACCCTATCTC
genomic: TGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaacca ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT-CCGGAACCCTATCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAgtagcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcag

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