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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt...

Basic information

species Oryza sativa
transcript LOC_Os04g59040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G104918_T03 (Zea mays), 5'ss of exon 5
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcagggg-atcagcctgcaagtccttt
 ||||| |||||||||||||| || || || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||| | || | | | | | ||  |  ||     ||  |    |     |   | |  ||   | ||| |         |    |  || |      | || |
AGTCCTTTACTCATCAGTTGTATACCCTCACAATTATGGTTTCATTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTGGTCCTGATGCAGgttagtc-agtcttccttttcccacttgtctgtgtcatgtggggacatttgtgaagaatgtagagtattcactctttgtattacaaggcccttgtttctgt

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G061928_T02 (Zea mays), 5'ss of exon 5
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt
 ||||| |||||||||||||| || || || |||||||||||| |||||||||| ||||||||||||||||| |||||||||||  | |||||||||||||| | ||     |  | |  || | |    ||||     || |  |    | | |  | |  |      |  ||  |   | ||    |    || |   
AGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCCTGATGCAGgttagtcttcctttttccacttgtctgtgtcatgtggggcatttgtgaagaatgtagagtattcactctttggattacaaggtccttatttctgttcagg

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctt--tgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt
 ||  | |||||||||||||| ||||| ||||| ||||||||||| ||||| || || |||||||||||||||||||| |||||  |||| || |||||||||| |   |     ||        |  ||  |  | || || ||||  || || || ||   | | | |   |  |       |    | | |  |     
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa--

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA14G16860.1 (Glycine max), 5'ss of exon 2
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacat-gcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt
 ||  | || ||||||||||| ||||| ||||| |||| ||| || ||  | ||||| ||||||||||| |||||||| ||| || |||| || |||||||||| |   |   | ||      |  || |  |  || || |  | ||   | || |   | ||| | |   | ||                         
GGTTTTGTATTCATCAGTTGTTTATCCACATAACTATGATTTTATCCCTCGCACACTGTGTGAAGACAACGATCCAATTGATATTTTGGTTCTTATGCAGgtaaattagtaccgttttcaaattcatatattttacacaagaagcatta--aatactg-tttataatattctatag-------------------------

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA19G45050.1 (Glycine max), 5'ss of exon 4
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaact-----ccattgt--gcttcttttctttta-aacatgcaaaacagtcc-tttgcattattaactgatagtgtctgagagcaggggatc-----agcctgcaagtccttt--------------------------------------------------
 ||  | || ||||||||||| ||||| ||||| |||||||| || ||  | ||||| |||||||||||||||||||| |||||| |||| || |||||||||| |     ||||| |    ||| | | ||||| || | |||  | |  |  |||  | ||||   |     ||| | | |    |  |       |   |  || |  ||                                                   
GGTTTTGTATTCATCAGTTGTTTATCCACATAACTATGGTTTTATCCCTCGCACACTGTGTGAAGACAATGATCCAATTGATGTTTTGGTTCTCATGCAGgtaaattagtaccattttcaaattcatatattttacaagaagcattaaatcctgtttataatattctatagacatgtgtaaaattgtgtaaatgtagaatgttttaaattgttgaatagacaatgactatttaattaagaattttttctacattgttatgatag

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA03G42280.1 (Glycine max), 5'ss of exon 5
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt
 ||  | || ||||||||||| ||||| ||||| |||||||| || ||  | ||||| |||||||||||||||||||| |||||| |||| || |||||||||| |||| ||| |    ||   ||| ||  |    || || |  |  |  | |||  | | | | | |    |||  |  |                 
GGTTTTGTATTCATCAGTTGTTTATCCTCATAACTATGGTTTTATCCCTCGCACACTGTGTGAAGACAATGATCCAATTGATGTTTTGGTTCTCATGCAGgtaaatccagtgtacaatattctattttaat-tattgaataggcgataactat-ttatttaagaatttttttctgcattgttttgatag-----------

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA18G18510.1 (Glycine max), 5'ss of exon 4
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaact-----ccattgt--gcttcttttcttttaaacatgcaa----aacagtcctttgcattattaactgatagtgtctgagagcaggggatc--agcctgc---aagtccttt--------------------------------------------------
 ||  | || |||||| |||| |||||  |||| |||||||| || ||  | ||||| |||||||||||||||||||| |||||| |||| || |||||||||| |     ||||| |    ||| | | ||||| ||| | |     ||   |  |||  | ||||   |     ||| | | |    |  |    ||  |||   || |  ||                                                   
GGTTTTGTATTCATCATTTGTTTATCCATATAACTATGGTTTTATCCCTCGCACACTGTGTGAAGACAATGATCCAATTGATGTTTTGGTTCTCATGCAGgtaaattagtaccattttcaaattcatatattttacacaagaagcattaaatattgtttataatattctatagacatgtgtaaaattgtgtaaatgtagaatgccttaaattgttgaataggcaatggctatttaattaagaattgtttctgcattgttttgatag

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT2G46860.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacat-gcaaaacagtcctttgcattattaactga--tagtgtctgagagcaggggatcagcctgcaagtccttt
  || | ||||| || ||||| ||||| || ||||| || ||||| ||| ||||| | ||||||||||| |||||  | ||||| || ||||| ||||||||||||   || |    |     |   ||  ||    ||| |   | |||  || | | ||||  |||  |||||     |  |                   
GATCTTGTACTCCTCCGTTGTTTATCCACACAATTACGGATTCATCCCACGGACATTGTGTGAAGACAACGATCCTCTTGATGTCCTTGTCCTTATGCAGgtaactgtgtttt--cacaaccatcaaaattatcatcaaataccacattgtgttgtaacctgagttagcttctgattcgtgtag-------------------

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv02s0025g02980.t01 (Vitis vinifera), 5'ss of exon 4
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctt--tgcattattaactgatagtgtctgagagca--ggggatcagcctgcaagtccttt-----------------
|||| |||| ||||| || |||||||| ||||| ||||| ||||||||  | || || |||||||||||||||||| |||||||| |  |||| |||||||||  || |    | |    ||   | ||  ||   |    ||| ||  |     | |||    | |||   |||   |  ||   |     | ||||  |                    
TGTCTTATATTCATCTGTGGTGTATCCTCATAACTATGGATTCATTCCCCGTACCCTATGTGAAGACAATGATCCACTGGATGTTTTAATCCTCATGCAGgtagttcaaactagatagcatttaatcaataataagagctcgtctttgttttgcaactaaacagttgtgggcgagtagattggaagtgtttttacaagctcaaactgacatttttgaacag

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S315_67V6.1 (Physcomitrella patens), 5'ss of exon 2
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgta-actccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt-
| |||||||||| || || ||||| || || |||||||||||||||||| | || ||||| || ||| | ||||| || |||||||||||| | ||||||||| | ||| |||||| |   |    |||     |||  || || | |        ||   |||    |  |||   | | |    |  || | |   | | 
TATCCTATACTCGTCTGTGGTGTACCCGCACAATTATGGTTTCATTCCACGCACCCTTTGCGAGGACGAGGATCCCATCGATGTTCTGGTCATCATGCAGgtagagtcctttgtgcgtgaatgaagttagtg--gcacgactgtgcgtaatcccgctattggatgagttgagagcagaagaggcgtgtttgaatggagtgtg

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S552_1V6.1 (Physcomitrella patens), 5'ss of exon 5
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaac-tccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt-
| |||||||||| || || ||||| || || |||||||||||||||||| | || ||||| || ||| | ||||| || |||||||||||| | ||||||||| | ||| |||||| |   |    |||     |||  || || | |        ||   |||    |  |||   | | |    |  || | |   | | 
TATCCTATACTCGTCTGTGGTGTACCCGCACAATTATGGTTTCATTCCACGCACCCTTTGCGAGGACGAGGATCCCATCGATGTTCTGGTCATCATGCAGgtagcgtcctttgtgcgtgaatgaagttagtg--gcacgactgtgcgtaatcccgctattggatgagttgagagcagaagaggcgtgtttgaatggagtgtg

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 5'ss of exon 6
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattat-taactgatagtgtctgagagcaggggatcagcctgcaagtccttt---
| || | |||||||||||||| ||||| || |||||||| ||||||||| | || |||||||| ||  | ||||| || |||||||| ||| | |||||||||   | |||       |||| ||||    |   ||      | |||| ||| | | | ||| |  | ||||||       | ||    | || | |      
TATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCATTATGCAGgta---ctattcaagacttttttttttccttactaaatttcaacatttgtattttgtgaatgagatagactgagatttttatagcaaag-gtaaatgcacgtaa

upper sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ27219 (Selaginella moellendorffii), 5'ss of exon 4
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt
 || || ||||| || || ||||| ||||| || ||||||||||||||  | || || || |||||||| |||||| |||| ||  |||||||||||||||||       ||| ||| || |      ||  | | |    |    || ||                                                 
GGTGCTGTACTCGTCGGTCGTGTACCCCCACAACTATGGTTTCATTCCTCGTACTCTGTGCGAAGACAACGATCCATTGGACGTCTTGGTCCTGATGCAGgtag------tgttctttttgtaagacgaagttactacggtgggggtttcag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86417243|gb|CI031452.1|CI031452
EST:     GTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|55433781|gb|CV730004.1|CV730004
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|3768324|gb|AU032351.1|AU032351
EST:     CACTTTGTGAAAGACAATGATCCAATGGATGGTCCTGGGTCCTGATGCAG                         GAGCCTGTTAATCCTGGGTTCCTTCCTCCGTGCTAAAGCAATTGGCCT
genomic: CACTTTGTGAA-GACAATGATCCAATGGATGTTC-TGG-TCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGG-TTCCTTCCTCCGTGCTAGAGCAATTGGCCT
EST: gi|33794379|gb|CF323075.1|CF323075
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|33681023|gb|CF309262.1|CF309262
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|88300646|gb|CI587450.1|CI587450
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|88985582|gb|CI016291.1|CI016291
EST:     CTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: CTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|88427290|gb|CI586838.1|CI586838
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGC
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGC
EST: gi|86523613|gb|CI163819.1|CI163819
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|33686066|gb|CF314305.1|CF314305
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|58602895|gb|CK013423.1|CK013423
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|33681024|gb|CF309263.1|CF309263
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|66915284|gb|CX102132.1|CX102132
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|11026234|gb|AU162835.1|AU162835
EST:     TGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: TGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|27554006|gb|CA997906.1|CA997906
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|55433023|gb|CV729535.1|CV729535
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|163918341|gb|EG713193.1|EG713193
EST:     TCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: TCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|32948454|gb|BP185026.1|BP185026
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|218494174|gb|FG955165.1|FG955165
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|58599062|gb|CK009590.1|CK009590
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTA
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTA
EST: gi|55409712|gb|CV722088.1|CV722088
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGC
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGC
EST: gi|87007333|gb|CI279004.1|CI279004
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|33693190|gb|CF321429.1|CF321429
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTGTTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|58671895|gb|CK060581.1|CK060581
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|8527453|gb|AU092268.1|AU092268
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|3768325|gb|AU032352.1|AU032352
EST:     TCCAATGGATGTTCTGGTCCCTGATGCAG                         GANCCTGTTTTTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: TCCAATGGATGTTCTGGT-CCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|88984409|gb|CI014964.1|CI014964
EST:     GACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|55434349|gb|CV730296.1|CV730296
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
EST: gi|163925905|gb|EG712281.1|EG712281
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATT
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATT
EST: gi|86848615|gb|CI293930.1|CI293930
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCC
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCC
EST: gi|86421029|gb|CI057018.1|CI057018
EST:     GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAG                         GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG
genomic: GGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 66 (downstream exon)
Score: 152

TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccat ... atccacacagGAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctttgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt

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