1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCAGGAGCTGTTCGGCTGCGAGAGCATTCCTAGTTCTGGATTATCAGAGTTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttcctttgtcaagtgccatagccactgaattctttgttaggttacacccggcgaaaatttttctttgttaggttacaatatataaaatattaa...
species | Oryza sativa |
transcript | LOC_Os04g56980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|86903507|gb|CI322990.1|CI322990
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|88303615|gb|CI508221.1|CI508221
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: ATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|88491602|gb|CI428874.1|CI428874
genomic: ATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: TGGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|86504620|gb|CI147253.1|CI147253
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|88411383|gb|CI518907.1|CI518907
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: ACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|89193205|gb|CI050503.1|CI050503
genomic: ACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|29642597|gb|CB647604.1|CB647604
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCEST: gi|29660434|gb|CB656709.1|CB656709
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
EST: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
genomic: TTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttc ... gtccatgcagATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGGAGCTGTTCGGCTGCGAGAGCATTCCTAGTTCTGGATTATCAGAGTTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTGgttagttttcctttgtcaagtgccatagccactgaattctttgttaggttacacccggcgaaaatttttctttgttaggttacaatatataaaatattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccggcg