1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCTTTAATCGGGTCGTCTATTGAGGCGGCTACTGGTGTTGTGTACAATATCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaatatttcttgccattgtcttgaactgtctttgaagaagtatgatatagcactgtaatatgttaagtcgaaaaacttaagatgctattatcacgatcatactccacaatttagggctactggaattatgtggcctaggtgattgaagtgctttgttttgaccaatgcttatgcacgttttgcag
species | Oryza sativa |
transcript | LOC_Os04g56970.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|88490497|gb|CI427769.1|CI427769
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACCAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|88245610|gb|CI245459.1|CI245459
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCGGCAAATATAATTTTCGGGGCTGTTEST: gi|86423508|gb|CI062269.1|CI062269
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|86425204|gb|CI070301.1|CI070301
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|86505788|gb|CI148421.1|CI148421
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|89179058|gb|CI043563.1|CI043563
genomic: TAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|89195825|gb|CI007244.1|CI007244
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|2311708|gb|C27863.1|C27863
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|88249754|gb|CI249603.1|CI249603
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|88245954|gb|CI245803.1|CI245803
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|8251105|gb|AU091451.1|AU091451
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: AGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTEST: gi|29655651|gb|CB651926.1|CB651926
genomic: AGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
EST: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAG ATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
genomic: TCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaa ... cgttttgcagATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTTAATCGGGTCGTCTATTGAGGCGGCTACTGGTGTTGTGTACAATATCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaatatttcttgccattgtcttgaactgtctttgaagaagtatgatatagcactgtaatatgttaagtcgaaaaacttaagatgctattatcacgatcatactccacaatttagggctactggaattatgtggcctaggtgattgaagtgctttgttttgaccaatgcttatgcacgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT