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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGgtaattcctgaaattatgtagctattatcctttttttttgggaaaaacttgtgatggtttcttttcgtcatgccagatccaatatggcttatccttaatc...

Basic information

species Oryza sativa
transcript LOC_Os04g52710.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 5
GATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGgtaattcctgaaattatgtagctattatcctttttttttgggaaaaacttgtgatggtttcttttcgtcatgccagatccaatatggct-tatccttaatc--
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GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtgaaatt-tgcaaaccttttgtcatctgtatcaacatatgttaggttgata--ttttctttatgtttaaacaaaagaaacaacatccttgatagc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658246|gb|CB654521.1|CB654521
EST:     GTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAG                         CTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACT
genomic: GTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGgtaattcctg ... tgatgaccagCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACT
EST: gi|38477762|gb|CF961895.1|CF961895
EST:     GTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAG                         CTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTT
genomic: GTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGgtaattcctg ... tgatgaccagCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTT