Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag

Basic information

species Oryza sativa
transcript LOC_Os04g52361.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtca-gttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
|||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||             |||  | |||||||       | | | | | |       ||||   || |||  |     ||||||| | |||   |  | | || |||| |      |  || |                        
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaa-------------tactctggtttttggacttccaaactaaccct------tagagtccctcttacct---gtattgtcaagatcaataaaatggaacaatgaaacacaactattgta------------------------

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G044800_T01 (Zea mays), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||   ||  ||  ||    |||||| |||     ||| | ||     | |    |  |||    |  |      ||  | |   || | |  |  |                                          
GTATGAGAAGAGGCACTCCAACATTCCTGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaatgcttgtgtctgatcactc---ttttgagtccagcttatcttgtttgtctagaacaataatatggactgcagatccttctctacgttcaacaatgataa------------------------------------------

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT3G48930.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaa-aacttaactcccataccttagtt--tttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||| ||||||||||||| ||||||| |  |  | | ||  |      | ||   |  | |  ||   || ||| | |||       |  || || |||     ||  |   |     |||                                                   
GTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGgttatgatctgattcaaacctacaaattgtctccattgattctgattatcgtgaatttgttttgatctttttgtttgttaatgattgataatttcag---------------------------------------------------

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G23740.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
 ||||||||||| ||||||||||| || || || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| |   |||  |    |    ||  |||| |    | ||  |  |     | |||     | ||  | |||     |||     | ||                                                        
ATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGgtgagtattaggt--tgtcttatacctttttatgattcagg-tagtgccggaaaacgat--ttctgattgtttgtg-atttatgttgcag-------------------------------------------------------

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT4G30800.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaac---ttaactcccatac-cttagtttttgactccttagaat-catcttaaataacagaggtgctattagttcaa-acattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
 |||||||| || || || |||||||| ||||| || ||||| |||||||||||||| ||||| || | ||| | |||||| || ||||||| |       |||   | |||  ||| ||||||   ||    |||| |||  ||    | |    |||    | ||  | ||  | |   || | |  || |||  | | |  ||         |  ||    ||| |            
ATATGAGAAAAGACACTCAAACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCGTGTTACCATTGGGCAATGCAGgttaggagcactaatatctatatacttggtttttcgttcaaaggaattcatgctattgtataatactgcctgaactttgataccatctttatttatcacgcaagt-ttctaaactt-----atcaagttaacgattcag------------

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactt-aactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
 |||||||||||||| || |||||||| ||||||   || |||||||||||||| |||||||| || ||||| || ||||||||||||||||||| ||| || |   |   | |    |||| |     |  |  |  || | | | || |       | ||   |||  |||  |||     |   |  |  |||   |||  ||       || | ||||   |||        
ATATGAGAAGAGGCACTCAAACATTCCTGCTCACACATCGCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAGTGCAGgtaaatcttcaattgaaactacctccagtttgtccttccaataaaaagttgatttagaggg-------tggt--gaactctgt--gtttgtt-actgaacataatgttgtttctttc------tatattttccttattcag-----

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0008g06220.t01 (Vitis vinifera), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag
 |||||||||||||| || || || || || ||  | |||||||||||||||||||| || ||||| ||||| || |||||||||||||||| |   |  |     ||   || ||||||  ||  || ||   || |  |     | | |   | ||  |  ||| |||  ||  |   |   |   |||                                            
ATATGAGAAGAGGCACTCAAATATACCAGCACATATATCCCCATGCTTCCGTGTCAAAGAGGGTGATCATGTTATTATTGGCCAGTGCAGgttagtttagag----atttttttgttttt--cttttttgaggaatttacag--gtaaatggtttcttgttcaaaatatttacatcttgtcacccatttacag------------------------------------------

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S51_307V6.1 (Physcomitrella patens), 5'ss of exon 5
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgc--attttcaacag
||| ||||||||||| || ||| |  | || |||||||||||    |||||||| ||||| |||||| | |||||||||||||| ||||||| |   |     ||  |||||||  |    |    ||    | ||  | ||  | |  | ||| |       ||| |||  || |       |  || | | |  || |   || |||||   |||          ||||   |||
GTACGAGAAGAGGCACTCAAACTTGGCCGCCCACGTCTCCCCTGCTTTCCGTGTTAAGGAGGGTGACAAGGTCATCATTGGCCAATGCAGgttag-ttctttgcctctaccttaaatgaatatcagttc--tttatactgaactaaatggttgccac----ctaaaaatta-caat-------gagagcattttttgagtgactttctgaaagccaacccgcatttgtttttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86530213|gb|CI170419.1|CI170419
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88211180|gb|CI210820.1|CI210820
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88562277|gb|CI492994.1|CI492994
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTTTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88483892|gb|CI421163.1|CI421163
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88564115|gb|CI494832.1|CI494832
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88373020|gb|CI501014.1|CI501014
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88292354|gb|CI500302.1|CI500302
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|87026526|gb|CI252480.1|CI252480
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88565701|gb|CI496418.1|CI496418
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88479521|gb|CI416792.1|CI416792
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88564883|gb|CI495600.1|CI495600
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88373613|gb|CI506040.1|CI506040
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86423515|gb|CI062276.1|CI062276
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|426812|gb|D22885.1|D22885
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86507849|gb|CI150482.1|CI150482
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88979376|gb|CI025878.1|CI025878
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88285233|gb|CI504904.1|CI504904
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86513920|gb|CI156553.1|CI156553
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|4716480|gb|AU057596.1|AU057596
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88561804|gb|CI492521.1|CI492521
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86257119|gb|CI061882.1|CI061882
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88567643|gb|CI498360.1|CI498360
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88489614|gb|CI426886.1|CI426886
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88467949|gb|CI509764.1|CI509764
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86518147|gb|CI158353.1|CI158353
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86528901|gb|CI169107.1|CI169107
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88567737|gb|CI498454.1|CI498454
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88225902|gb|CI225818.1|CI225818
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88563346|gb|CI494063.1|CI494063
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|87025091|gb|CI263599.1|CI263599
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88425112|gb|CI562427.1|CI562427
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86530419|gb|CI170625.1|CI170625
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|87030607|gb|CI255036.1|CI255036
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88567929|gb|CI498646.1|CI498646
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88483762|gb|CI421033.1|CI421033
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88518890|gb|CI446544.1|CI446544
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86835368|gb|CI346835.1|CI346835
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86602181|gb|CI260651.1|CI260651
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88568711|gb|CI499428.1|CI499428
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGTTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|38474928|gb|CF959061.1|CF959061
EST:     CATGCTTCCGTGTACAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTATCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CATGCTTCCGTGT-CAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88542156|gb|CI471465.1|CI471465
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88503163|gb|CI430669.1|CI430669
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86419278|gb|CI054079.1|CI054079
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|86822694|gb|CI251785.1|CI251785
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCGTCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88268189|gb|CI377926.1|CI377926
EST:     CCATGCTTCCGTTTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88566162|gb|CI496879.1|CI496879
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|33660458|gb|CF291425.1|CF291425
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88318483|gb|CI505887.1|CI505887
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88418640|gb|CI504264.1|CI504264
EST:     CCATGCTTCCGTGTCAANGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGGAGGTTCAACGTCCTGAAGGTCATCCCAGCTG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGT-GAGGTTCAACGTCCTGAAGGTCATCCCAGCTG
EST: gi|88318966|gb|CI510761.1|CI510761
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|3763186|gb|AU029938.1|AU029938
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88418533|gb|CI504157.1|CI504157
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88204984|gb|CI204833.1|CI204833
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88483223|gb|CI420494.1|CI420494
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88517294|gb|CI444948.1|CI444948
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88211424|gb|CI211064.1|CI211064
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|8527888|gb|AU092703.1|AU092703
EST:     CCATGCTTCCGTGTCAAGGAAGGTGNCCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88244400|gb|CI243522.1|CI243522
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|5005510|gb|AU070275.1|AU070275
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|4716481|gb|AU057597.1|AU057597
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88293726|gb|CI507835.1|CI507835
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
EST: gi|88205590|gb|CI205439.1|CI205439
EST:     CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG                         GCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG
genomic: CCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 256

GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaactta ... ttttcaacagGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGGATCCACCGGCGGCAGCGGTGGCAAGAAGGCCTTTACCGCAGCCTGAGCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtcagttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA