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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTGCATCTCACCCTGAGACCAGGATCCTTTTCTTAACTGgtaatggtcatggtcctttgcatctctgtctctcatatgcgtgtatgatcatgcttttgtaatctatatttgacgtatcctaattcctaaatgtgtag

Basic information

species Oryza sativa
transcript LOC_Os04g52340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52340.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 5
TGTGTTGCATCTCACCCTGAGACCAGGATCCTTTTCTTAACTGgtaatg-gtcatggtcctttgcatctctgtctctcatatgcgtgtatgatca-tgcttttgtaatctatatttgacgta--tcctaat--tcctaaatgtgtag--------------------------------------
||||||||||| |||||||||||||||||||||||| ||| ||||||   | ||||   | ||||||     |   | | ||||   ||| || | ||  ||  ||| || |  |     |   |||||||  ||   |   ||||                                       
TGTGTTGCATCGCACCCTGAGACCAGGATCCTTTTCCTAAATGgtaacaagccatg---ccttgcataatatttgtttaaatgcacatataataaatgtattattaacctgtcctccgtctccttcctaatagtctcgatcatgtatgtcacaactattattgacagaatttaaattcttttcag