1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatggagatttgttctcaaagtatgtttaagttgaaattcttagtagattatttatagtatggtatccaccagttcctaacatagttcggatac...
species | Oryza sativa |
transcript | LOC_Os04g48820.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCEST: gi|33795919|gb|CF323827.1|CF323827
genomic: GTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
EST: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCEST: gi|218500580|gb|FG960548.1|FG960548
genomic: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
EST: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGEST: gi|33794900|gb|CF323330.1|CF323330
genomic: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCG
EST: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCEST: gi|58689823|gb|CK078510.1|CK078510
genomic: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
EST: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GCGAACTGGACCTTTCCCAGCTGGTGTEST: gi|8956451|gb|BE230254.1|BE230254
genomic: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGT
EST: GTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCEST: gi|66921923|gb|CX108771.1|CX108771
genomic: GTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
EST: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCEST: gi|8956439|gb|BE230242.1|BE230242
genomic: GTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
EST: GTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAA GCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
genomic: GTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatg ... ttgcttgcagGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatggagatttgttctcaaagtatgtttaagttgaaattcttagtagattatttatagtatggtatccaccagttcctaacatagttcggatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT