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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATGATTGCCAAGGCATCAACCACTGAGGAGATTTCTACTGGTGTTGCTGGGAGTAGAAATGGTGCATTGCTTCTTGTGAGTGATGAACATTCTGTTgtggccatcccatgagtttcatgtggttaatcatactagcataacccctgaatggtaaatttcgatcattgcaacag

Basic information

species Oryza sativa
transcript LOC_Os04g48070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g48070.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AC235534.1_FGT007 (Zea mays), 5'ss of exon 5
---------------------ATGCATGATTGCCAAGGCATCAACCACTGAGGAGATTTCTACTGGTGTTGCTGGGAGTAGAAATGGTGCATTGCTTCTTGTGAGTGATGAACATTCTGTTgtggccatcccatgagtttcatgtggttaatcatactagcataacccctgaatggtaaatttcgatcattgcaacag
                      |||||  ||||||||||||||| |  ||||||||| |   |||||||||| || || ||||||||||||||||| |||||||||| |||| | ||  | |||  | |    |      ||| ||  |  |  ||||    | |  | ||     |  || | |    |||| ||||
ACGATGGTCAGACATATTCTACTGCATTGTTGCCAAGGCATCAATCGTTGAGGAGATCTTACCTGGTGTTGCAGGAAGCAGAAATGGTGCATTGCTGCTTgtgagtgctgaatagtccctagtgttc-tgttgttcagaacatctgtatcctgttactgtggttaagcatggtatctccatat-ggcttttgctacag