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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATATCACTATTGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCAGAAACGgtataaatgctgccttcagtctgtttacataggctaggttttcctttgcttggaaccattaactcaattattgtttcctgtttggtcattatataattat...

Basic information

species Oryza sativa
transcript LOC_Os04g47240.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g47240.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G175504_T01 (Zea mays), 5'ss of exon 4
GAAATATCACTATTGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCAGAAACGgtataaa-tgctgccttcagtctgtttacataggctaggtt--ttcctt--tgcttggaaccattaactcaattattgtttcctgtttggtcattatataattat
||||||||||| ||||| ||| |||  ||||||||||| |||||||||||||||||||||| |||||||| || | |||||| | |||  || | |  |   ||  ||||||  |||||    |  ||    |||||   |     ||| |  |  |||| ||||   
GAAATATCACTCTTGAGTCGCTTACGACATCCAAATATTGTACAATACTATGGATCAGAAATGgtataaagtgtttccttcaatatgtacacttggtttttcttgcttccttaatgcttctg-ctgttcctgcaatttcagaagattgtat--ttgttatttaatc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58611652|gb|CK039364.1|CK039364
EST:     TGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCAGAAACG                         GTTGATGATAAGCTTTATATACTACTTGGAGTATGTATCTGGTGGATCTAT
genomic: TGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCAGAAACGgtataaatgc ... cccaatacagGTTGATGATAAGCTTTATATA-TACTTGGAGTATGTATCTGGTGGATCTAT
EST: gi|4715352|gb|AU056469.1|AU056469
EST:     TGAGCCGCCTACAGCATCCAAATATCGNACAATACTATGGGTCAGAAACG                         GTTGATGATAAGCTTTTATATATACTTGGGGTATGTATCTGGTGGNTCTAT
genomic: TGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCAGAAACGgtataaatgc ... cccaatacagGTTGATGATAAGCTTT-ATATATACTTGGAGTATGTATCTGGTGGATCTAT