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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAAATCCATGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaatacattgcttcatattgatcaatttatcatctgcttgtgattgtttcctcgacacattttaatcatattgtgcatcttggaagaacatttga...

Basic information

species Oryza sativa
transcript LOC_Os04g46570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G101181_T01 (Zea mays), 5'ss of exon 5
GATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAAATCCATGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaatacattgcttcatattgatcaatttatcatctgcttgtg-attgtttcctcgacacattttaatcatattgtgcatcttggaagaacatttga-
| |||||||||||||||| |||||||| ||||| || |||||||||||  ||||||| ||||| |||||||||||| |||| || || ||||||||||||||||||||          |    | ||    |     |   ||||   |||||||  |    | |||||        || |  | |  || || || | || 
GTTGTCAATGGATAAACTACCATGGACTATGCGCGCACCTAGGAAATCGGTGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGAgtaagtaacctgcaaaacctgtgtaatggcctggaacttatcttgcatattgtttgattacaatattttggctg-gctgggtgt-taagatgagcagtagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33677331|gb|CF305570.1|CF305570
EST:     TGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGC--                         --TTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAA
genomic: TGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaata ... aattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAA
EST: gi|4715473|gb|AU056590.1|AU056590
EST:     NCCTGGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGA                         GCTTTGCAGCTAACAAAGTTTGATTATCGGGGTCACGAACGAGCTTGATGA
genomic: -CCTG-ATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaata ... aattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGC-TCACTAACGAGCTTGATGA