1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATGGTTGTCATGGTGTAGGAATGAGGAATATAATGCGACAGATAGGACTAGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaacagttgctccaatttttatgctatatcttgctgcaaaattgtgatttcttaggagcctgctttatgtttgtaatgttctatacttgatcaggtgagatcataag
species | Oryza sativa |
transcript | LOC_Os04g46390.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGGTGAGATCATAAGEST: gi|29639999|gb|CB645008.1|CB645008
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGC--A-G---A---G-GATC---AGgtatgcaaca ..
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29639999|gb|CB645008.1|CB645008
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29643236|gb|CB648243.1|CB648243
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29643236|gb|CB648243.1|CB648243
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29643291|gb|CB648298.1|CB648298
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29643291|gb|CB648298.1|CB648298
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29678521|gb|CB674796.1|CB674796
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29678521|gb|CB674796.1|CB674796
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|25798325|gb|CA754286.1|CA754286
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGGTGAGATCATAAGEST: gi|29668764|gb|CB665039.1|CB665039
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGC--A-G---A---G-GATC---AGgtatgcaaca ..
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29668764|gb|CB665039.1|CB665039
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29637040|gb|CB642049.1|CB642049
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29637040|gb|CB642049.1|CB642049
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29645124|gb|CB650131.1|CB650131
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG TGACAGGGATAAATGCACAAACTGCAGAGCTAGCAAAGTTATTCAGGAGAAEST: gi|29685950|gb|CB682225.1|CB682225
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataagTGACAGGGATAAATGCACAAACTGCAGAGCTAGCAAAGTTATTCAGGAGAA
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGGTGAGATCATAAGEST: gi|29614042|gb|CB619055.1|CB619055
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGC--A-G---A---G-GATC---AGgtatgcaaca ..
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29614042|gb|CB619055.1|CB619055
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29683515|gb|CB679790.1|CB679790
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGGTGAGATCATAAGEST: gi|29680639|gb|CB676914.1|CB676914
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGC--A-G---A---G-GATC---AGgtatgcaaca ..
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29680639|gb|CB676914.1|CB676914
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAG GEST: gi|29670817|gb|CB667092.1|CB667092
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaaca ... agatcataag-
EST: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGGTGAGATCATAAG
genomic: AGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGC--A-G---A---G-GATC---AGgtatgcaaca ..
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGTTGTCATGGTGTAGGAATGAGGAATATAATGCGACAGATAGGACTAGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaacagttgctccaatttttatgctatatcttgctgcaaaattgtgatttcttaggagcctgctttatgtttgtaatgttctatacttgatcaggtgagatcataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT