1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGgtgaagtagtgtataacttttacttaagtctcttcaaggttatataacatcccaggatattgctctcagatgtacttacagcatatttgaaacaatatcc...
species | Oryza sativa |
transcript | LOC_Os04g45670.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACATCTAGCCCAAAGATANTGACCGAATGAGGCAAGAAGCTGAAGCCCAG GCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAEST: gi|218478214|gb|FG952326.1|FG952326
genomic: ACATCTAGCCCAAAGATA-TGACCGAATGAGGCAAGAAGCTGAAGCCCAGgtgaagtagt ... gctttcctagGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTA
EST: GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAG GCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATEST: gi|38475950|gb|CF960083.1|CF960083
genomic: GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGgtgaagtagt ... gctttcctagGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAAT
EST: GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAG GCTGTTGAAGTTTCAAGAGGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATEST: gi|33684002|gb|CF312241.1|CF312241
genomic: GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGgtgaagtagt ... gctttcctagGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAAT
EST: GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAG GCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAAT
genomic: GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGgtgaagtagt ... gctttcctagGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGgtgaagtagtgtataacttttacttaagtctcttcaaggttatataacatcccaggatattgctctcagatgtacttacagcatatttgaaacaatatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC