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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGACCAGTGTAGGGTTCACGTTGTTCCTGCCTTTTCTCCATATTACTCTCCCCAGGCAGAGgtaaggtttatctgtactttacaccaacacaaatatatattttttagtattggttattgagggtaccttgtcttgaactatcag

Basic information

species Oryza sativa
transcript LOC_Os04g44710.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G31430.1 (Glycine max), 5'ss of exon 4
CCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGACCAGTGTAGGGTTCACGTTGTTCCTGCCTTTTCTCCATATTACTCTCCCCAGGCAGAGgtaaggtttatctgtactttacaccaacacaaatatatattttttagtattggttattgagggtaccttgtcttgaactatcag---------------------------
  | || |||||||||||||||||||| ||||||||||| || ||   | |||| || ||||| ||||| ||| ||||||| ||  |||| || || || ||||  ||| | |     ||  |       ||    |  | ||| | | |     | ||    |   |  | ||  |||||  |                           
ATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAAGGATCAACCTCGGGTGCATGTTGTCCCTGCATTTGCTCCATACTATGCTCCTCAAGCTGAAgtaaattttcttt----cttgtatagttggaagcccaattctttcaat-tgcacgaatggaattttgtcttttttcactatatgaactgattaaacctgtttgtcttgtag

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G25010.1 (Glycine max), 5'ss of exon 4
CCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGACCAGTGTAGGGTTCACGTTGTTCCTGCCTTTTCTCCATATTACTCTCCCCAGGCAGAGgtaaggtttatctgtactttacaccaacacaaatatatattttttagtattggttattgagggtaccttgtcttgaactatcag---------------------------
  | || |||||||||||||||||||| ||||||||||  || ||   | |||| || ||||||||||| ||| ||||||| ||  |||| || || || ||||  ||| | | |  | ||     |  |  |   ||| |||  | |    |      |   | || | | || |   ||  |                           
ATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAGGGATCAACCTCGGGTGCATGTTGTTCCTGCATTTGCTCCATACTATGCTCCTCAAGCTGAAgtaaattttctttcttgtatagttggaagccca---atactttcaattggatgaatgcaattttgcccttttttcactaatatgaactgattaaatctgtttgtcttgtag

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA15G07800.1 (Glycine max), 5'ss of exon 4
CCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGACCAGTGTAGGGTTCACGTTGTTCCTGCCTTTTCTCCATATTACTCTCCCCAGGCAGAGgtaaggt---ttatctgtactttacaccaacacaaatatatattttttagtattggttattgagggtacctt---gtcttgaact-atcag-----------------
  | || |||||||||||| ||||||| ||||||||||||||||||     ||| || ||||| ||||| ||| ||||||| ||  |||| || || || ||||  |   ||| || ||   |     |  |  |   ||  |||| || |||    | |    | | |  |   ||  |||||| || |                  
ATTGGTAATTGATGATCGCCTGAAAGTGTGGGATGAGAAAGACCAGCCGCAGGTGCATGTTGTCCCTGCATTTGCTCCATACTATGCTCCTCAAGCTGAAgtaatttcacttacctatataatgtgatactaatatcttaagttttata-tataaaatttcatagtttctgtagtgttctgaactgattaaacttctttatcttctag

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G31510.1 (Glycine max), 5'ss of exon 4
CCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGACCAGTGTAGGGTTCACGTTGTTCCTGCCTTTTCTCCATATTACTCTCCCCAGGCAGAGgtaaggtttatctgtactttacaccaacacaaatatatattttttagtattggttattgagggtacc---ttgtcttgaactatcag--------
  | || |||||||||||||||||||| ||||||||||||||||||  | |||| || ||||| ||||| ||| ||||||||||| |||| || || || ||||  |   |      | ||     | || |||||| ||    |   |||| || |  || || |     ||  |  |  | |           
ATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAAAGACCAGCCTCGGGTGCATGTTGTCCCTGCATTTGCTCCATATTACACTCCTCAAGCTGAAgtaatttcacttacctatataatgtgatactaatatacataaaatttcattgtttctgtagtgttctgaactgattaaacttgtttatcttgtag

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 5
lower sequence: AT4G21670.1 (Arabidopsis thaliana), 5'ss of exon 4
CCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGACCAGTGTAGGGTTCACGTTGTTCCTGCCTTTTCTCCATATTACTCTCCCCAGGCAGAGgtaaggtttatctgtactttacaccaac--acaaatatatattttttagtattgg---ttattgagggtacc-ttgtcttgaactatcag----------
  | || ||||||||||| |||||||||||||||||||| || |||   ||||| || || |||||||| ||  |||| ||||| ||||| || || || |||||  | || | ||| |      ||      |  | | ||     || ||  |   ||  | ||  ||   ||      ||  ||||           
ATTGGTAATTGATGATCGATTGAAAGTTTGGGATGAGAAGGATCAGCCGAGGGTACATGTGGTTCCTGCATTCGCTCCCTATTATTCTCCTCAAGCTGAAgtaagtataatttttacctagttgaaattggttatgaaaaatgcagaagcatgtgaatttgataagaatattattaatcaaaagaatcacaagtcattta