ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag

Basic information

species	Oryza sativa
transcript	LOC_Os04g42380.1
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G086486_T02 (Zea mays), 5'ss of exon 7

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctt-tgaatgt---ttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacag------ttattttg----tgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
||| |||||||| |||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||  || |   |  || |  |   |||||| | |    || | ||   |      || || | | || | |   |||| || ||| |   | |  |   || |   | || | || | ||  |  |       || |||||    ||||||  || ||  | || |||  ||   |  |||     |||||| ||||
GTATGAGAAGAGACACTCCAACATCCCTGCGCACATTTCACCATGCTTTCGTGTCAAGGAAGGAGATCATGTGATCATTGGCCAGTGCAGgtaaagcttgctatatctttcctggacctgctttttgtaatgctgtacctggatg-gcatggtttctgaaacgcaattag--caaagctcaatat---aacccgtccttccctctgttggacatgaaatatctatcttggctttttttggcactgtgctctattccgtagatgcacttat-gttgtactcctgttttaatttcag

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA17G11430.1 (Glycine max), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
||||||||| ||||||||||| ||||||||||| || |||||    |||||||| ||||||||||||||||| || ||||| || ||||||| |   |    | |       |||   |||||||         ||| |||||   || |||||||  |    | ||| | | ||| ||| ||   | |  ||||   |  |||   ||                                                                        
GTACGAGAAAAGGCACTCCAACATTCCTGCTCATATATCACCTGCTTTCCGTGTGAAGGAAGGAGATCACGTTATTATTGGTCAATGCAGgtgagattatatagga------gaaaccttttgtg--------ttttaacctggatattttgtgtatttataggtatagatatctgtatgatt---cttttatttgtaacacttctgcag-----------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA01G25840.1 (Glycine max), 5'ss of exon 2

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || || ||| | || || |||||||| || ||||| ||||| || ||||||||||||||||||||||| || || |||||||| ||||||| |    | |    |       |   ||| || ||   || |  | |   | | |  ||||| |||   | ||  || | |  |     | |||   |   | ||   | | ||     ||| ||                                                                 
ATATGAAAAGCGTCATTCAAATATTCCAGCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATgttattattggccaatgcaggttagatcttt---ataggagaaaccttttctgggattactaatgtgggaattt-atcgttgtctactctattg--tatagatttagccatctgattgtctttatttgtaccatat----gtatag-----------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA09G12420.1 (Glycine max), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || || ||| | || |||||||||||||| || |  ||||| || ||||||||||| ||||||||||| || || |||||||| ||||||| |    | | ||      ||    |  ||  | | ||   | ||| |   |||  | |||| ||  |      ||   |       | |||| ||    || ||                                                                                     
ATATGAAAAGCGACATTCCAATATTCCTGCACATACATCACCTTGTTTCCGTGTTAAAGAAGGAGATCATGTTATTATTGGCCAATGCAGgttagatct-ttataggagatttctgggattactaatgggagaattt-attagtgtctattgtatagatttaaccatctgattgcctttatttgtgc-catatgtttag----------------------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G23400.1 (Glycine max), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
|||||||||||||||||| |||||||||||||| || |||||   ||||||||| |||||||| |||||||| || ||||| || ||||||| |      | || |       |   ||||||||           | |||||| ||| |||| ||  | |  | ||| | | ||    ||||||   |   || |   |  |  ||                                                                          
GTACGAGAAGAGGCACTCAAATATTCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGGGATCACGTTATTATTGGTCAATGCAGgtgaga----ttatataagagaaaccttttttgtg--------tactaacctgtaaatcttgtatatttaatggtatagatatct----gtttgattcttgtttgtaacacttctgcag------------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA09G12430.1 (Glycine max), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || || ||| |||| || ||||||||| | ||||| ||||| || ||||||||||||||||||||||| || || |||||||| ||||||| |  ||| ||||         |   ||| || ||   || | | |||    | | |||||| |||   | ||  || | |  | |   | |||   ||  |||  |  |   |   | ||| ||                                                                 
ATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGgttagactt-tcataggag--aaaccttttctgggattactaa-tgtgagaatttattgttgtctactctattg--tatagatttaaccatctga--ttgcctttatttgtgcca--tatgtatag-----------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT3G48930.1 (Arabidopsis thaliana), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
||| ||||||||||| || || ||||| |||||  | ||||| ||||||||||||||||||||||| ||  | ||||||||||| |||||||          ||| ||   |  |    |       | ||| | ||||    ||| | | ||| |  |       |    | ||   ||||||   ||||  ||  |||| | ||                                                                           
GTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGgt---------tatgatctgattcaaacctacaaattgtctc-cattgattc-tgattatcgtgaattt------gttttgatctttttgtttgttaatga--ttgataatttcag---------------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G23740.1 (Arabidopsis thaliana), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || |||||||| || ||||| || ||||| ||  | |||||||| |||||||| |||||||| || || || ||||||||||| ||||||| |    | | | |||   ||  |  ||||| |||    |||  | |  | | |||     | |  || | ||  |   |   |  |||||  ||                                                                                               
ATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGgtgag---tattaggttgtcttatacctttttatgat---tcaggtagtgccg-gaaaacgattt--ctgattgtttgtga---tttatgttgcag-----------------------------------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT4G30800.1 (Arabidopsis thaliana), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtca-tgttcctttgaatg--tttttgtgacggctcactttgacctgtgaatgttgtgtacctcag--tgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaag-tacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || ||||| || ||||| || |||||||||||  |||| |||||||||||||| || ||||||||||  || | |||||| || ||||||| | |      | | |   | |   ||  |||| ||        | |    |   || ||  |   | ||| |   |  |||| | | | | |  |   |||   | ||||||| |||| | |  ||| | | |||                                                            
ATATGAGAAAAGACACTCAAACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCGTGTTACCATTGGGCAATGCAGgttaggagcactaatatctatatacttggtttttcgttcaaaggaattcatgctattgtataatac-tgcctgaactttgataccatctttatttatcacgca---agtttctaaacttatcaagttaacgattcag------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg---tcatgttcctttgaat--gtttttgtgacg----gctcactttgac--ctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || |||||||||||||| || |||||||||||||  || || ||||||||||| |||||||||||||| || || ||||||||||||||||||| |||    | |   | | |  | |  ||  ||   |      | | | || ||     |||||   |||||   | | |||| | ||   ||  | |||    ||   ||| || || | ||                                                                           
ATATGAGAAGAGGCACTCAAACATTCCTGCTCACACATCGCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAGTGCAGgtaaatcttcaattgaaactacctccagtttgtccttccaataaaaagttgatttagagggtggtgaactctgtgtttgttactgaacataatgttgtttctttctatat---tttccttat-tcag---------------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0008g06220.t01 (Vitis vinifera), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
 || |||||||||||||| ||||| || || || || || || ||||||||||| || || || ||||| || || |||||||||||||||| |   | |  |  ||  ||||  | | ||| |   ||   | ||| ||  || |||| | | |   |||    ||  | | ||            |                                                                                             
ATATGAGAAGAGGCACTCAAATATACCAGCACATATATCCCCATGCTTCCGTGTCAAAGAGGGTGATCATGTTATTATTGGCCAGTGCAGgttagtttag--agatttttttgtttttcttttttgagg---aattt-acaggtaaatggtttcttgttcaaaatatttacatcttgtcacccatttacag------------------------------------------------------------------------------------------

upper sequence: LOC_Os04g42380.1 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ16024 (Selaginella moellendorffii), 5'ss of exon 5

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctg--tgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag
||| || ||||||||||| ||  |  | |||||  | || |||||||| ||||| |||||||||||| | |||||| | ||||||||||||| |  |  |       |  | ||||    |||  ||      || ||  ||   |||  | |   |  ||   |    |                                                                                                                 
GTATGAAAAGAGGCACTCAAACGTGGCAGCTCATGTGTCGCCGTGCTTTCGTGTCAAGGAAGGAGATAAAGTGATCCTCGGCCAGTGCAGgttagtcaagatcgtagctatagaattggattggaacaaaattctctgttctcattgatcgatccatctcttgtttggcag----------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|33653512|gb|CF276126.1|CF276126

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGCTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|87032308|gb|CI264089.1|CI264089

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|15851295|gb|BI799571.1|BI799571

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|29629652|gb|CB634661.1|CB634661

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|33653511|gb|CF276125.1|CF276125

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGGCTCAATGTGCTGAAGGTCATTCCGGCAG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGT-TCAATGTGCTGAAGGTCATTCCGGCAG

EST: gi|58596533|gb|CK007061.1|CK007061

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGG

EST: gi|88531405|gb|CI459878.1|CI459878

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88511630|gb|CI439136.1|CI439136

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|33655599|gb|CF278213.1|CF278213

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAG

EST: gi|88323673|gb|CI558694.1|CI558694

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|218494166|gb|FG952748.1|FG952748

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGC
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGC

EST: gi|86603039|gb|CI357403.1|CI357403

EST:     GGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCCTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: GGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88381315|gb|CI528295.1|CI528295

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|16576000|gb|BI803296.1|BI803296

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88986870|gb|CI033965.1|CI033965

EST:     GTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: GTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|58604496|gb|CK015024.1|CK015024

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|38468664|gb|CF952795.1|CF952795

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|29629653|gb|CB634662.1|CB634662

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|87025487|gb|CI267853.1|CI267853

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88482242|gb|CI419513.1|CI419513

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88432067|gb|CI562898.1|CI562898

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88502142|gb|CI429648.1|CI429648

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88381278|gb|CI526048.1|CI526048

EST:     TAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: TAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88269679|gb|CI380977.1|CI380977

EST:     CCGTGCTTCCCTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88210358|gb|CI210207.1|CI210207

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|86536606|gb|CI176812.1|CI176812

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|29682482|gb|CB678757.1|CB678757

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|86507806|gb|CI150439.1|CI150439

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88374639|gb|CI518506.1|CI518506

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCNTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|16576855|gb|BI804151.1|BI804151

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88991937|gb|CI035075.1|CI035075

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88244088|gb|CI243210.1|CI243210

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88506724|gb|CI434230.1|CI434230

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTCCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|86545282|gb|CI185488.1|CI185488

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|29682483|gb|CB678758.1|CB678758

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88278634|gb|CI399634.1|CI399634

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCACTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCA-G

EST: gi|86895513|gb|CI331336.1|CI331336

EST:     CCCTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTCCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGCCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88469172|gb|CI406443.1|CI406443

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88517149|gb|CI444631.1|CI444631

EST:     AAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: AAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88518689|gb|CI446343.1|CI446343

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|86512180|gb|CI154813.1|CI154813

EST:     CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG
genomic: CCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

EST: gi|88464443|gb|CI544904.1|CI544904

EST:     ATCATTTGCCAGTGCAG                         GCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGNCAGG
genomic: ATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 41 (upstream exon), 63 (downstream exon)
Score: 25

GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttg ... ttaatatcagGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTA

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Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGgtaaagcttgtcatgttcctttgaatgtttttgtgacggctcactttgacctgtgaatgttgtgtacctcagtgaatacaaacctgaatgtttgagcatgaattttctaatcttagccaagtaaagtacagttattttgtgtgcttcatcccagaaatccacaaattactcaactatctgtttaatatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA