1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaatttgctcatatgttgtacttccacttacagcagtcaaggaaattcagttgtgtggttcgaatgtatggaaaggctcattctcttgaatttctaaatgcag
species | Oryza sativa |
transcript | LOC_Os04g39270.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATEST: gi|23513963|gb|BU673400.1|BU673400
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATEST: gi|29616384|gb|CB621396.1|CB621396
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATEST: gi|2796268|gb|AA749562.1|AA749562
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: CAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATEST: gi|88372744|gb|CI612672.1|CI612672
genomic: CAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATEST: gi|30226600|gb|CB964492.1|CB964492
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGGAACTTTACTATEST: gi|14981037|gb|BI305728.1|BI305728
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGNCAACTNTACTATEST: gi|29615583|gb|CB620595.1|CB620595
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: AGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATEST: gi|29615582|gb|CB620594.1|CB620594
genomic: AGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
EST: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG TGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
genomic: GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaat ... ctaaatgcagTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGgtctgtaaatttgctcatatgttgtacttccacttacagcagtcaaggaaattcagttgtgtggttcgaatgtatggaaaggctcattctcttgaatttctaaatgcag
- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - GCTGGA