1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACGgtataagttcaagaagaattttatcataacatatgttcaaacattaatttgatgaatgttaaattcatatgcgccaactaggctaatatcatagcacaca...
species | Oryza sativa |
transcript | LOC_Os04g35190.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATATGACG GTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGCEST: gi|218488546|gb|FG955819.1|FG955819
genomic: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACGgtataagttc ... gcttcttcagGTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGC
EST: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATATGACG GTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGCEST: gi|58674542|gb|CK063229.1|CK063229
genomic: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACGgtataagttc ... gcttcttcagGTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGC
EST: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATATGACG GTCTTTATGTCAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGCEST: gi|29655901|gb|CB652176.1|CB652176
genomic: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACGgtataagttc ... gcttcttcagGTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGC
EST: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACG GTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGC
genomic: TTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACGgtataagttc ... gcttcttcagGTCTTTATGTTAGTAGGAACACATATATCCATACGGGGACTGCGGAGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACGgtataagttcaagaagaattttatcataacatatgttcaaacattaatttgatgaatgttaaattcatatgcgccaactaggctaatatcatagcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG