1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttctctctctctctctctctcacacacacacatcaggttcatttgcttacaattaaccttcctttaatacag
species | Oryza sativa |
transcript | LOC_Os04g32330.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|58676164|gb|CK064851.1|CK064851
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|58670038|gb|CK058724.1|CK058724
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|88356597|gb|CI626212.1|CI626212
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAACA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|218479259|gb|FG949034.1|FG949034
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|58592377|gb|CF990685.1|CF990685
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|218481751|gb|FG959381.1|FG959381
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATATCACAGATTGAAACTGEST: gi|58668980|gb|CK057666.1|CK057666
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|58659774|gb|CK048454.1|CK048454
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTGEST: gi|58689671|gb|CK078358.1|CK078358
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
EST: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA AACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
genomic: TTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttc ... tttaatacagAACCTGGTGACAGAGTTGAGGCTGATGAGCCCATAGCACAGATTGAAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGAgtatgatttctctctctctctctctctcacacacacacatcaggttcatttgcttacaattaaccttcctttaatacag
- - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA