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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGAAGTATTTCTTATGAACTGAAATAATACGCCATGTATATTCCATATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactgattcaaatggacattttacactgaattccagaatgctgggttcttttgacatgaaaattttcacttgcag

Basic information

species Oryza sativa
transcript LOC_Os04g31690.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88958626|gb|CI096142.1|CI096142
EST:     ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTT                         GCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
genomic: ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactg ... tcacttgcagGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
EST: gi|86522333|gb|CI162539.1|CI162539
EST:     ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTT                         GCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
genomic: ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactg ... tcacttgcagGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
EST: gi|27546938|gb|CA767312.2|CA767312
EST:     ATTTCCATCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTT                         GCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
genomic: ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactg ... tcacttgcagGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
EST: gi|86837004|gb|CI347551.1|CI347551
EST:     ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTT                         GCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
genomic: ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactg ... tcacttgcagGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
EST: gi|5038575|gb|AU070685.1|AU070685
EST:     ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTT                         GCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
genomic: ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactg ... tcacttgcagGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
EST: gi|29631481|gb|CB636490.1|CB636490
EST:     ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTT                         GCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC
genomic: ATTTCCGTCCATGTTGTTTCATCATCATCCTACTGCATTCTGGCATGCTTgtaagtactg ... tcacttgcagGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGAC