1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCATCAGAGAGAATTACAATGAAGAACTTGCCTAACCCTTCAAATCAGGATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccacatctgaacaacatattttgttaaactgatatgaccatttatggaagtaaagtagttgtgtgcttgcatggaactctgtgaatttgttttat...
species | Oryza sativa |
transcript | LOC_Os04g02500.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAG GCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCAEST: gi|16579036|gb|BI813131.1|BI813131
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCC-AAATGGCTCCTTCCAAG GCTCCAGTT-GC-ATGTAAGCAAGAAACCTAAGGTTGCTAC-AAAATGTCAEST: gi|32947961|gb|BP184533.1|BP184533
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAG GCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCAEST: gi|86492603|gb|CI135236.1|CI135236
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAG GCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCAEST: gi|29638463|gb|CB643472.1|CB643472
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAG GCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCAEST: gi|58694097|gb|CK082784.1|CK082784
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCGAAATGGCTCCTTCCAAG GCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCAEST: gi|86858897|gb|CI275113.1|CI275113
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
EST: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAG GCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
genomic: ATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccaca ... gcacggacagGCTCCAGTTGGCAATGTAAGCAAGAAACCTAAGGTTGCTACAAAAATGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCATCAGAGAGAATTACAATGAAGAACTTGCCTAACCCTTCAAATCAGGATCAGCGTAAAACCTTGAAGTTTGGCTTCTCCAAAATGGCTCCTTCCAAGgtaccccacatctgaacaacatattttgttaaactgatatgaccatttatggaagtaaagtagttgtgtgcttgcatggaactctgtgaatttgttttat
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