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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGgttattcttggtgaagtcatcatgttttcttgttacaactctacttcctcatctcatttttccctttttcaaccgttccacag

Basic information

species Oryza sativa
transcript LOC_Os03g64219.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g64219.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G035150_T02 (Zea mays), 5'ss of exon 6
TTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGgttattcttggtgaagtcatcatgttt--tcttgttacaactctacttcctcatctcatt---tttccctttttcaaccgttccacag-------------------------------------------------------------------------------------------------
|| |||||  |||| |||||||||||||| ||  ||||||| ||||||||||| ||||| ||| | ||||| ||||| | | ||   |||   |  |  |||  ||| |  |    |  | |||   ||   | |   ||||  |  |  |   || | ||                                                                                                   
TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTTGTCCGGCAGCAAGTGGTGAAGCAGgtcagtgttttcgaaaagactagttttgttctggccatgtatggatttctgtatgcaaatgcatttcattggtaaatgtgtactaccatacttgttcccagtatctctccccccttttagcaatcatgcttgaacattcttgttgttctttgttttaaccccttcaaattgctggcacctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29671297|gb|CB667572.1|CB667572
EST:     ACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAG                         CTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGG
genomic: ACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGgttattcttg ... cgttccacagCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGG
EST: gi|87019141|gb|CI297342.1|CI297342
EST:     ACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAG                         CTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGG
genomic: ACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGgttattcttg ... cgttccacagCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGG
EST: gi|86418296|gb|CI032505.1|CI032505
EST:     TTCGGCAACAAATAGTGAAACAG                         CTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGG
genomic: TTCGGCAACAAATAGTGAAACAGgttattcttg ... cgttccacagCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGG