1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaaatacagtaataaagcttgaaattgttacaaaagcctgggttctggaatcttactgtaatcatgatcacag
species | Oryza sativa |
transcript | LOC_Os03g63430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGAT-ATGTACGCGCACAGATTTTATCCEST: gi|29664786|gb|CB661061.1|CB661061
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: ATTNTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|29639942|gb|CB644951.1|CB644951
genomic: ATT-TGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|58685186|gb|CK073873.1|CK073873
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|33812345|gb|CF332062.1|CF332062
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|88265103|gb|CI368877.1|CI368877
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|29664482|gb|CB660757.1|CB660757
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|88210956|gb|CI212596.1|CI212596
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGAT-ATGTACGCGCACAGATTTTATCCEST: gi|29645308|gb|CB650315.1|CB650315
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|58681237|gb|CK069924.1|CK069924
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAEST: gi|29645307|gb|CB650314.1|CB650314
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACA
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|33795887|gb|CF323811.1|CF323811
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|29658196|gb|CB654471.1|CB654471
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|29664785|gb|CB661060.1|CB661060
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|58659555|gb|CK048235.1|CK048235
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCCAGATTATGTACGCGCACAGATTTTATCCEST: gi|300215653|gb|HO088279.1|HO088279
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|29678374|gb|CB674649.1|CB674649
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|58678571|gb|CK067258.1|CK067258
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|29637544|gb|CB642553.1|CB642553
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|117217926|gb|CT845200.1|CT845200
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|86534283|gb|CI174489.1|CI174489
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCCEST: gi|19388435|gb|BM929262.1|BM929262
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTACGCGCACAGATTTTATCC
EST: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAGAGCAG GTCCGGCTGTGCTTGGATCGTCAAGATTATGTAC
genomic: CATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaa ... atgatcacagGTCCGGCTGTGCTTGGATCGTCAAGATTATGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAGgtatgaagaaatacagtaataaagcttgaaattgttacaaaagcctgggttctggaatcttactgtaatcatgatcacag
- - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG