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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTCATTTGCCGTAATGAAGCAGAAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatgaaattatgattggatattactatgcttattgggataatatcagtcaatcatttgtcatctggtataccatcatatgtttttctctttattgtttgacag

Basic information

species Oryza sativa
transcript LOC_Os03g63090.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63090.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G112015_T01 (Zea mays), 5'ss of exon 5
GTGCTCATTTGCCGTAATGAAGCAGAAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatgaaattatgattggatattactatgcttattgggataatatcagtcaatcatttgtcatctggtataccatc-atatgtttttctc-tttattgtttgacag
|| || || ||||| || ||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||  |  || |   |  | |||| || | ||| |||||||| |   ||||||       |   ||| ||| |||  ||    | | |  | |  |||  ||| |     
GTACTGATATGCCGCAACGAAGCAGAAAAATGCTTGATAGAGACTTCAATCAACTCCATACGAATAAGCATGAAGgtacactggagagctttgtgggatttttcaatggttattggggt---atcagt--gctgctatacatttggcatattatttggacgctactgtgatttgatgtat-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218490476|gb|FG964035.1|FG964035
EST:     AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAG                         GTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
genomic: AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatga ... tgtttgacagGTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
EST: gi|87036117|gb|CI189564.1|CI189564
EST:     AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAG                         GTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
genomic: AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatga ... tgtttgacagGTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
EST: gi|218502090|gb|FG953891.1|FG953891
EST:     AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAG                         GTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
genomic: AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatga ... tgtttgacagGTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
EST: gi|33683666|gb|CF311905.1|CF311905
EST:     AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAG                         GTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
genomic: AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatga ... tgtttgacagGTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
EST: gi|117226003|gb|CT845644.1|CT845644
EST:     AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAG                         GTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG
genomic: AAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatga ... tgtttgacagGTCAAACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGG