1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctgcataagacaagaagccatacgtaatagcctgactaattggtccggttggcttaattcgctttgttcttgaaacttaggaaatgtttgatt...
species | Oryza sativa |
transcript | LOC_Os03g60740.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|33818134|gb|CF334893.1|CF334893
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|3762111|gb|C99359.1|C99359
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|33686688|gb|CF314927.1|CF314927
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG CCCTGGTGGTCTGCAAGACAAAGEST: gi|32947908|gb|BP184480.1|BP184480
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGG-AGTGAGGGAGTTGATTGTTGGEST: gi|88490376|gb|CI427648.1|CI427648
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: GTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|163923266|gb|EG711075.1|EG711075
genomic: GTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCACAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|89189979|gb|CI013546.1|CI013546
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|33821839|gb|CF336730.1|CF336730
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|3762112|gb|C99360.1|C99360
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|88847804|gb|CI005990.1|CI005990
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|89198494|gb|CI007554.1|CI007554
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|33817947|gb|CF334802.1|CF334802
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|117234788|gb|CT847886.1|CT847886
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGATGGCCTGCAAGACAAAGACGGGGGAGTGAGGGAGGTTGATTGTTGEST: gi|86537041|gb|CI177247.1|CI177247
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAG-TTGATTGTTG
EST: CCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|88239537|gb|CI240014.1|CI240014
genomic: CCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|86506649|gb|CI149282.1|CI149282
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: CCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|33660166|gb|CF291133.1|CF291133
genomic: CCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|86507076|gb|CI149709.1|CI149709
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: ATACTATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|88227808|gb|CI227288.1|CI227288
genomic: ATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|55415365|gb|CV727741.1|CV727741
genomic: AAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: TTATACAATAATAAG GCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGEST: gi|42592251|gb|CK738737.1|CK738737
genomic: TTATACAATAATAAGgtaccacctg ... ttccatgtagGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGG
EST: AGTCAGAACAGTATTTGGGCAAACGGTGGAGTCCCTTATACAATAATAAG GCCCTGGTGGCCTGCAAGACAAAGAC
genomic: AGTCAGAACAGTATTTGG-CAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctg ... ttccatgtagGCC-TGGTGGTCTGCAAGACAAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGgtaccacctgcataagacaagaagccatacgtaatagcctgactaattggtccggttggcttaattcgctttgttcttgaaacttaggaaatgtttgatt
- - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - GTGGAG