1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACTGTTGCGAGGTGCCTTGGCATTCCATATCACAATGTCCGTATCATCACGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatctgactatgatgatttgcatttgcagaacaattatattcttgaactggtggaatttctcgtctaactctgtagttattcgtactacaatgca...
species | Oryza sativa |
transcript | LOC_Os03g57690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACAT GTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGAEST: gi|29672952|gb|CB669227.1|CB669227
genomic: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACAT GTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGAEST: gi|58688136|gb|CK076823.1|CK076823
genomic: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAACAATGCAT GTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGATTCGAEST: gi|29646620|gb|CB651627.1|CB651627
genomic: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACAT GTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGAEST: gi|29675814|gb|CB672089.1|CB672089
genomic: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACAT GTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGAEST: gi|58592575|gb|CF990883.1|CF990883
genomic: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: GAGAAGAGTTGGAGGAGGTTTTGGTGGGAAAGGCAATGAAAACAATGCAT GTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGATTCGAEST: gi|218499295|gb|FG965742.1|FG965742
genomic: GAGAAGAGTTGGAGGAGGTTTTGGT-GGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: GCAATGAAAACAATGCAT GTTGCCGCTGCAT-T-CTGTCGCCGCA-TCAAGCTGCGGCGTCCGATTCGAEST: gi|218480859|gb|FG967912.1|FG967912
genomic: GCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
EST: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAACAATGCAT GTTGCCGCTGTATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGATTCGA
genomic: CGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatct ... tgcttgacagGTTGCCGCTGCATGTGCTGTCGCCGCATTCAAGCTGCGGCGTCCGGTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGTTGCGAGGTGCCTTGGCATTCCATATCACAATGTCCGTATCATCACGAGAAGAGTTGGAGGAGGTTTTGGTGGAAAGGCAATGAAAGCAATACATgtgagcatctgactatgatgatttgcatttgcagaacaattatattcttgaactggtggaatttctcgtctaactctgtagttattcgtactacaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA