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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa...

Basic information

species Oryza sativa
transcript LOC_Os03g56300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AC195340.3_FGT002 (Zea mays), 5'ss of exon 5
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa--
||||||||||||| ||||||| |||||||| || ||||| ||||||||||| |||  | |||| |||||||| ||||| || ||||||||||| |||||||||||||  | |    |||  |   |   ||  | || ||| |  | | | | |    ||  |||   || | | ||   |   |  |  | ||   |    
TGAGAAGGGTCCTCTGAGCCCCCGCTTCCGTGGTGAGCACGCTCTCAGACGTTATGAATCTGGGGAAGAGCGCTGCATTGCTTGTAAACTATGCGAAGCTgtaagttgtactgaagtttaaagttttcttacttcagatgatga-agatcaaatacagccaggaacctgttg-ttttgctgtctttcccgaatgctagttgt

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G072806_T01 (Zea mays), 5'ss of exon 5
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa-----
||||||||||||| |||| || |||||||| || ||||| ||||||||||| ||   | |||| |||||||||||||| || ||||||||||| |||||||||||||  | ||   |||  |   |   ||  | || | | |  | | | | |    ||  |||  ||| | | || ||  | |  || |||   ||       
TGAGAAGGGTCCTCTGAGTCCCCGCTTCCGTGGTGAGCACGCTCTCAGACGTTACGAATCTGGGGAAGAGCGTTGCATTGCTTGTAAACTATGCGAAGCTgtaagttgtacttatgtttaaagttt---tacttcagattatga-acatcaaatacagccaggaaccagttgtttttctatct-ttcctgagtagtggttgtcaa

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA05G34890.1 (Glycine max), 5'ss of exon 5
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa
|||||| || |||||||||||||| ||||| || || ||||| ||| |||  |||||||| || || || |||||||| || || ||||| ||||||||||||| |      || |||  ||       |   | |       ||     ||   |  |     || |   ||   |||     ||  |   ||| |   
TGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGACAATATCCAACAGGGGAGGAACGTTGCATTGCTTGCAAACTCTGTGAAGCTgtaactctttgattgtttatcaatagttttggtttaacaatcatttagagtatgcattctacccagcatatgactgtatgacagtagtttcctgttgctt

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G31520.2 (Glycine max), 5'ss of exon 6
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttct-tttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa--
|||||| || |||||||||||||| ||||| || || ||||| ||| | || |||||||| || || || ||||| || || || ||||| ||||| ||||||||   | ||  || |||   |  ||| |  | |  |   | | || | |    |  |     |   | | |||      | | | |    |   |     
TGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGGCGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAGGCTgtaag--gctttgactgtttatgcaataattttg-gtttcacaatgatccttgagcatactaccgaatggcatataactgctggacagcattttcctgtttct

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA15G07790.1 (Glycine max), 5'ss of exon 6
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttct-tttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataacta-agtgtaggaa------
|||||| || ||||||||||| || ||||| || || ||||| ||| |||| |||||||| ||||| || || ||||| || || ||||| ||||||||||||||   | ||| || |||  ||  ||| |  |||| || |   |   ||  |  |||         |  | ||   |||    |||||  ||   || |       
TGAGAAAGGCCCTTTGAGCCCCCGTTTCCGGGGTGAACATGCACTCCGACGATATCCAACAGGAGAGGAACGCTGCATTGCTTGCAAACTTTGTGAAGCTgtaag--gcttttactgtttatacaataatt--gtgatttcacaatgatccgtgagagcatgcattctaccaaatggcata----taactgcaggacagcattttcct

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT1G79010.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttt-tgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtg--taggaa
||||||||||||| |||||||||||||||| || || ||||||||  || | ||||| || || ||||| || ||||| ||||| ||||| ||||||||||| ||||      ||  | || |   |  ||   | | || | ||| |   |  |  |   | | |    |   | |   |  |  | || |||   ||||||
TGAGAAGGGTCCTCTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGAAGATATCCTACCGGGGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTgtgagttttgagatcgatatgaatccttcatt--taatttaacgttctctttgttctgatatggtactc-tgagtctatcaaattcatcttagtaattaggaa

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT1G16700.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa-----
|||||||||||| ||||||||||| ||||| || || || |||||  || | ||||||||||| ||||| || ||||| ||||| ||||| || |||||||| ||||    |||    |  | | ||    |  || || |    | | |    ||     | ||   || ||| ||  | | |||      | | |        
TGAGAAGGGTCCATTGAGCCCTCGTTTCCGTGGTGAACACGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGCCTGCAAACTCTGCGAAGCTgtgagtt----tttgaagtctatgctactcga--gaattcataccacagcacaatattgacataaagtgt-gatttttcatggatactggtcttttgctcatcag

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv03s0063g02550.t01 (Vitis vinifera), 5'ss of exon 5
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaag-ttacattttcttttgcacggt--aaataagtgagttgaagttatacctag-ttagccctagaagaagtagatattatagg-tataactaagtgtaggaa
||| || || |||||||||||||| || || ||||| ||||| ||| |||| || || || ||||| ||||| ||||| ||||||||||| ||||||||||||||  | |||  || ||  |   ||   | | | |  | ||     |  |  || || |||  ||| |  ||        |    | | | |||||       
TGAAAAAGGCCCTTTGAGCCCTCGTTTTCGTGGAGAACATGCACTCCGACGTTACCCTACAGGAGAGGAGCGCTGCATTGCCTGTAAACTCTGTGAAGCTgtaagacttcataatcattctctttgtttgattgaatttggtgtgaggaaccaaagctttgccaaagatggcgtgatccgcctgccctttgaataagttc-----

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S83_83V6.1 (Physcomitrella patens), 5'ss of exon 4
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaat--aagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa
 ||||||||||||||||| ||||| ||| |||| |||||||||||  | || ||||| || || ||||| || ||||| || || || |||||||| || ||||||  |   | ||||| | |   |  |  |||  |    |  |||     |  | ||     | |     | | | ||     ||  |  |        
CGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGCATGCTCTGCGTCGGTATCCTACCGGTGAAGAACGGTGCATTGCTTGCAAGCTATGTGAGGCGgtaagtggc-cctccttttcctctacacctccaagccacagaacattaagaggaactcgcaaattatgtgtgtgctttcattcacctatttctgcacgccg-

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ15239 (Selaginella moellendorffii), 5'ss of exon 4
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttat--acctagttagccctagaagaagtagatattataggtataactaagtgtaggaa
 ||||| || ||  | |||||  | || || || ||||||||| |  |||||||||| || ||||||||||| |||||||| |||||||| || ||||| |||||  ||        | | |    |||   | |  ||  | | ||  |  ||| |   | |   ||                                  
CGAGAAAGGACCACTCAGCCCCAGGTTTCGTGGCGAGCATGCTTTACGACGCTATCCCACGGGAGAAGAGCGATGCATCGCTTGTAAACTCTGCGAAGCGgtaagaaac--------tggaaaaaaaaagttgcgtttttcattgattgatatagctgttcttcacag----------------------------------

upper sequence: LOC_Os03g56300.1 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ08392 (Selaginella moellendorffii), 5'ss of exon 4
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttat--acctagttagccctagaagaagtagatattataggtataactaagtgtaggaa
 ||||| || ||  | |||||  | || || || ||||||||| |  |||||||||| || ||||||||||| |||||||| |||||||| || ||||| |||||  ||         || |    ||    | |  ||  | | ||  | |||| |   | |   ||                                  
CGAGAAAGGACCACTCAGCCCCAGGTTTCGTGGCGAGCATGCTTTACGACGCTATCCCACGGGAGAAGAGCGATGCATCGCTTGTAAACTCTGCGAAGCGgtaagaaac---------tggaaaaaaacgttgcgtttttcattgattgatctagctgttcttcacag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800793|gb|CF326268.1|CF326268
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|88982034|gb|CI027611.1|CI027611
EST:     GAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|89182756|gb|CI114125.1|CI114125
EST:     TGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: TGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|88967944|gb|CI098186.1|CI098186
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|58609092|gb|CK037125.1|CK037125
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|89197083|gb|CI021923.1|CI021923
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|58597562|gb|CK008090.1|CK008090
EST:     GGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|117249355|gb|CT863061.1|CT863061
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|88211351|gb|CI210991.1|CI210991
EST:     CTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: CTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86822693|gb|CI251784.1|CI251784
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|27577014|gb|CA999708.1|CA999708
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|58595391|gb|CK005919.1|CK005919
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|89161966|gb|CI102314.1|CI102314
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86829321|gb|CI284980.1|CI284980
EST:     TGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: TGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86824378|gb|CI262920.1|CI262920
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86520018|gb|CI160224.1|CI160224
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|55409521|gb|CV721897.1|CV721897
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86543282|gb|CI183488.1|CI183488
EST:     AGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: AGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86530426|gb|CI170632.1|CI170632
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCGCAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|87031567|gb|CI263940.1|CI263940
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
EST: gi|86595399|gb|CI262637.1|CI262637
EST:     GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCT                         ATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT
genomic: GCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 54 (downstream exon)
Score: 95

TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttaca ... aaatgaccagATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTgtaagttacattttcttttgcacggtaaataagtgagttgaagttatacctagttagccctagaagaagtagatattataggtataactaagtgtaggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC