1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAGCTTTATTCTAAATGGGTTCAAGCTGATGATGATAAGGAATACAAGATATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGgtatgcatatgactccttatgtaatcaccttcagtgttcagatattttcgttaacttaaggcctttgttttctcttgttag
species | Oryza sativa |
transcript | LOC_Os03g53250.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAG GGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACEST: gi|58678356|gb|CK067043.1|CK067043
genomic: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGgtatgcatat ... ctcttgttagGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGAC
EST: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAG GGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACEST: gi|33797190|gb|CF324459.1|CF324459
genomic: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGgtatgcatat ... ctcttgttagGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGAC
EST: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAG GGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACEST: gi|58687681|gb|CK076368.1|CK076368
genomic: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGgtatgcatat ... ctcttgttagGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGAC
EST: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAG GGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGAC
genomic: TATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGgtatgcatat ... ctcttgttagGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCTTTATTCTAAATGGGTTCAAGCTGATGATGATAAGGAATACAAGATATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGgtatgcatatgactccttatgtaatcaccttcagtgttcagatattttcgttaacttaaggcctttgttttctcttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG