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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctcttttgtttcctgctt...

Basic information

species Oryza sativa
transcript LOC_Os03g52840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 5
ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaa-tcattttcactctt-tatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctcttttgtttcctgctt
 |  ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| || | |  | |||   | |      | | |||||   || |    |    ||||  || | |   ||| |  || |   ||     ||| ||||  
GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatcttgtatagtctagcagcaatatctattatgttgccatgtcgtatgttccttttttgtgaac--atatctctttgcagtcaagcttttactgcac

upper sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 5
ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctct---tttgtttcctgctt
 ||||| || ||||| || || ||||||||||| ||||||||||| || || || ||||| || || ||||||||||||||||   | | |   | ||  |     |        | |  |||      |||    |||    | ||   | |||    |  |    | ||||   | ||
GTACATGGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacatatgatcatgtacgtcaagatagatgccatctgcatgtttcaaagca---atgtttttgaaattcttttctcaccatgaactggtttaaagttt

upper sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 5
ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctct---tttgtttcctgctt
 |||||||| ||||| || || ||||||||||| ||||||||||| || || || ||||| || || ||||||||||||||||   | | |   | ||| |     |        | || |||      |||    |||    | ||   | |||    |  |    | ||||   | ||
GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAGgtaaatacatatgatcatgtatgtcaagatagatgccatctacatgtttcaaagca---atgtttttgaaattcttttctcaccatgaactggtttaaagttt

upper sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ32604 (Selaginella moellendorffii), 5'ss of exon 5
ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctcttttgtttcctgctt
 | |||||||||||||||||| |||||||||||||| ||  | || || || ||  |  | |||    ||||||||||||  |  || ||| |    |         |   ||  ||  | |    | |||                                              
GTTCATTGATATGGCCGAGTCTTTGTGCCAGAAACGAGCACTAGAAGCTTTTCGTCTCAATCCAAACGAATGGGGAGgtacgtt-ttatcagtggcgaaaggataaagctctgacttc-ttttctttgcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58612638|gb|CK040350.1|CK040350
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29675547|gb|CB671822.1|CB671822
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|25798315|gb|CA754276.1|CA754276
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29615988|gb|CB621000.1|CB621000
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAACGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29624282|gb|CB629293.1|CB629293
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58612303|gb|CK040015.1|CK040015
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATTGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACT
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAAT-GTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACT
EST: gi|29614138|gb|CB619151.1|CB619151
EST:     CCACAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29636379|gb|CB641388.1|CB641388
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29619822|gb|CB624834.1|CB624834
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|33381238|gb|CF196581.1|CF196581
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29638078|gb|CB643087.1|CB643087
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58610008|gb|CK038041.1|CK038041
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29624606|gb|CB629617.1|CB629617
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|4714813|gb|AU055930.1|AU055930
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58689542|gb|CK078229.1|CK078229
EST:     CAGAAACGTGCTTTGGAGGCCTTCCGCTTGTGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CAGAAACGTGCTTTGGAGGCCTTCCGCTTG-GACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29621132|gb|CB626143.1|CB626143
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29641599|gb|CB646606.1|CB646606
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58661735|gb|CK050415.1|CK050415
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58609425|gb|CK037458.1|CK037458
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58613274|gb|CK040986.1|CK040986
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|117244508|gb|CT848411.1|CT848411
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29614628|gb|CB619641.1|CB619641
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29670801|gb|CB667076.1|CB667076
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58691585|gb|CK080272.1|CK080272
EST:     CCAGAAACGTGC-TTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58665373|gb|CK054059.1|CK054059
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAAGCTCTATCAGGGATCACCTGCCAACTTCCATGTTTACACT
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGG-TCACCTGCCAACTTCCATGTTTACACT
EST: gi|29646105|gb|CB651112.1|CB651112
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58657072|gb|CK045752.1|CK045752
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29618931|gb|CB623943.1|CB623943
EST:     CCAAAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29618036|gb|CB623048.1|CB623048
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29667991|gb|CB664266.1|CB664266
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29633899|gb|CB638908.1|CB638908
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29681406|gb|CB677681.1|CB677681
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29615274|gb|CB620286.1|CB620286
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29635394|gb|CB640403.1|CB640403
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTCGGACCCACCGAAATGGGGAG                         TGAATGCGCCACCTCT
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCT
EST: gi|29634586|gb|CB639595.1|CB639595
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTNTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|14571290|gb|BI118658.1|BI118658
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29646445|gb|CB651452.1|CB651452
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|38472219|gb|CF956350.1|CF956350
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29621678|gb|CB626689.1|CB626689
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58605171|gb|CK033204.1|CK033204
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29674038|gb|CB670313.1|CB670313
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|33800499|gb|CF326119.1|CF326119
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29634602|gb|CB639611.1|CB639611
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29678030|gb|CB674305.1|CB674305
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29681405|gb|CB677680.1|CB677680
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58695121|gb|CK083808.1|CK083808
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29672938|gb|CB669213.1|CB669213
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|33674867|gb|CF303106.1|CF303106
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29622694|gb|CB627705.1|CB627705
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|84117692|gb|CD285458.1|CD285458
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29665918|gb|CB662193.1|CB662193
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|33381615|gb|CF196958.1|CF196958
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|38471328|gb|CF955459.1|CF955459
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58654507|gb|CK043187.1|CK043187
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29630142|gb|CB635151.1|CB635151
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTTACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58606494|gb|CK034527.1|CK034527
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAANCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29613481|gb|CB618494.1|CB618494
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29674139|gb|CB670414.1|CB670414
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|88413328|gb|CI581343.1|CI581343
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58673445|gb|CK062131.1|CK062131
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|58609394|gb|CK037427.1|CK037427
EST:     CAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|4714773|gb|AU055890.1|AU055890
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|11442623|gb|BF430526.1|BF430526
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29634567|gb|CB639576.1|CB639576
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAAGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
EST: gi|29687893|gb|CB684168.1|CB684168
EST:     CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG                         TGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG
genomic: CCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcatt ... acctctgcagTGAATGTGCAACCTCTATCAGGGTCACCTGCCAACTTCCATGTTTACACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGgtaaatcattttcactctttatcttgccttgtcatgtttttatatgaactccagctttcatgcgcatcaatagcctttagtcctcttttgtttcctgctt

- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - -  TGGAGG