1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCCAGAGAATGTGCAAATATCCTGCAAAATCATTACCCTGAGAGGTTGGCTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAGgtacaggctctgattcgttttcataaatgaaatattgtgctatggatattgttctactcacatattagaaaccaagttatagtgtttgatacgggggaaaggaaatcttgattctttttgtaactcaaatgtttcaattgccttcag
species | Oryza sativa |
transcript | LOC_Os03g51430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTATTTGAGGCTTTTTGGAAG GTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTTAATTTTGTAEST: gi|29657775|gb|CB654050.1|CB654050
genomic: AAGTATTTGAGGCTTTTTGGAAGgtacaggctc ... ttgccttcagGTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTA
EST: CTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAG GTTGTCAAACATTTCCTTGAEST: gi|88257390|gb|CI359778.1|CI359778
genomic: CTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAGgtacaggctc ... ttgccttcagGTTGTCAAACATTTCCTTGA
EST: CTTTTT-GAAG GTTGTCAAACATTTCCTTGACCCAAAAATCAATCCAAGAAGGTGAATTTTGEST: gi|89184001|gb|CI046566.1|CI046566
genomic: CTTTTTGGAAGgtacaggctc ... ttgccttcagGTTGTCAAACATTTCCTTGACCC-AAAATCAATCC-AGAAGGTGAATTTTG
EST: AGTATTTGAGGCTTTTTGGAAG GTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTAEST: gi|38565624|gb|CK085077.1|CK085077
genomic: AGTATTTGAGGCTTTTTGGAAGgtacaggctc ... ttgccttcagGTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTA
EST: CTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAG GTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTAEST: gi|29657776|gb|CB654051.1|CB654051
genomic: CTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAGgtacaggctc ... ttgccttcagGTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTA
EST: CTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAG GTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTA
genomic: CTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAGgtacaggctc ... ttgccttcagGTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCAGAGAATGTGCAAATATCCTGCAAAATCATTACCCTGAGAGGTTGGCTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAGgtacaggctctgattcgttttcataaatgaaatattgtgctatggatattgttctactcacatattagaaaccaagttatagtgtttgatacgggggaaaggaaatcttgattctttttgtaactcaaatgtttcaattgccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG