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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaattagtaatttatcctagctttttgtctgttaatctattagaactctcgtcatttgttggttattgacttattttagacttggttttaaac...

Basic information

species Oryza sativa
transcript LOC_Os03g49600.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 5
GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaattagtaatttatcctagctttttgtctgttaatctattagaactctcgtcatttgttggttattg----acttattttagact---tggttttaaac---------------------------------------------------------
| || ||||||||  |||| ||||||||||| ||||| |||||||||||||||||||| || ||||| ||||| |  || || |||||||||||||   ||   || ||||    | | || |    |||  | ||   ||| ||    |||    |  |       ||  |   |||| |   | |||| | |                                                          
GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTGAGAAGAAATATGGAGGGTGGTTAAGCGCGAAGATGGCgtaagtcagtctaaagatatatctggtcatgttat----taacgtgtttcgactttctgtgttttcccgaaagaaggacacacaacatagaatctctagtttcacatgatatagaactggaaataccagattatacttatatatgtatacaatttgttttgtag

upper sequence: LOC_Os03g49600.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AC217401.3_FGT001 (Zea mays), 5'ss of exon 5
GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaattagtaatttatcctagctttttgtctgttaatctattagaactctcgtcatttgttggttattgacttattttag--acttggttttaaac
| || || || || | |||||||||||| | ||||||||||||||||||| |||| ||||| ||||| ||||| ||||| || |||||||||||||   ||  || |||    |  ||| ||  ||||  | |  |  || ||   ||      |   |  | |    |   |     |   || | || 
GCATTACACCGTACGCCAATCTTTACCATTCCGATCTCCCTCTTGCGCTTCAGAACAAGTATGGAGGGTGGTTAAATGCCAAGATGGCgtaagtcagtcta--aaattaattaatatttatggatgttcgtgtgctgaaattcgtttcggagtcttactcctaatccttgcaaatagataaattatgaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667348|gb|CB663623.1|CB663623
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|5004341|gb|AU069490.1|AU069490
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33793788|gb|CF322778.1|CF322778
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58676021|gb|CK064708.1|CK064708
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33797376|gb|CF324550.1|CF324550
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|14189009|gb|AU183652.1|AU183652
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGG-AGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
EST: gi|32948487|gb|BP185059.1|BP185059
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|218501129|gb|FG969556.1|FG969556
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58686123|gb|CK074810.1|CK074810
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTG
EST: gi|58656764|gb|CK045444.1|CK045444
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTG
EST: gi|29672036|gb|CB668311.1|CB668311
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58678675|gb|CK067362.1|CK067362
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGAGTCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGA-TCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
EST: gi|33381892|gb|CF197235.1|CF197235
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|88212028|gb|CI211668.1|CI211668
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58677218|gb|CK065905.1|CK065905
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33794165|gb|CF322973.1|CF322973
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACTTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58682006|gb|CK070693.1|CK070693
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAG
EST: gi|58680064|gb|CK068751.1|CK068751
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTT
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTT
EST: gi|29657770|gb|CB654045.1|CB654045
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|86898371|gb|CI292293.1|CI292293
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|15852844|gb|BI805640.1|BI805640
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTT-GGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33795224|gb|CF323484.1|CF323484
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33675008|gb|CF303247.1|CF303247
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|218498123|gb|FG968220.1|FG968220
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|218482013|gb|FG963445.1|FG963445
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|40490189|gb|BX899802.1|BX899802
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAGGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29643770|gb|CB648777.1|CB648777
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|428803|gb|D24959.1|D24959
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58675601|gb|CK064288.1|CK064288
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTT
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTT
EST: gi|29638180|gb|CB643189.1|CB643189
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58685477|gb|CK074164.1|CK074164
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCG
EST: gi|58680012|gb|CK068699.1|CK068699
EST:     CCCCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58685224|gb|CK073911.1|CK073911
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29678657|gb|CB674932.1|CB674932
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58668191|gb|CK056877.1|CK056877
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|8860126|gb|AU097444.1|AU097444
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTANGCGGACTTCTGNTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58682160|gb|CK070847.1|CK070847
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58679549|gb|CK068236.1|CK068236
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTGCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29629596|gb|CB634605.1|CB634605
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|14189007|gb|AU183650.1|AU183650
EST:     CTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
genomic: CTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGG-Cgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
EST: gi|33795297|gb|CF323520.1|CF323520
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58681508|gb|CK070195.1|CK070195
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAAGTC
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAA-TC
EST: gi|58683209|gb|CK071896.1|CK071896
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|14189008|gb|AU183651.1|AU183651
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|700314|gb|D46605.1|D46605
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29667382|gb|CB663657.1|CB663657
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58660539|gb|CK049219.1|CK049219
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33674893|gb|CF303132.1|CF303132
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29638848|gb|CB643857.1|CB643857
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29671916|gb|CB668191.1|CB668191
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaattagtaatttatcctagctttttgtctgttaatctattagaactctcgtcatttgttggttattgacttattttagacttggttttaaac

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT