1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTACAGAATGGCTGTTGAGTGTGCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgtttctcacatatggttatttaacttgttttgaactttttcaatgtgttaagagttggaagactatctttccatcatctagatactcttaaa...
species | Oryza sativa |
transcript | LOC_Os03g42220.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTAGAAACGC-TTGCTGGAGAGGACCATGGACAACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAEST: gi|66918817|gb|CX105665.1|CX105665
genomic: GCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
EST: GAAACGC-TTGCTGGAGAGGA-CATGGAC-ACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACANTTG-CATGACTACACTTAGTTCAEST: gi|218488070|gb|FG946099.1|FG946099
genomic: GAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACA-TTGCCATGACTACACTTAGTTCA
EST: AAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAEST: gi|88422879|gb|CI615179.1|CI615179
genomic: AAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
EST: TGCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
genomic: TGCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACAGAATGGCTGTTGAGTGTGCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgtttctcacatatggttatttaacttgttttgaactttttcaatgtgttaagagttggaagactatctttccatcatctagatactcttaaa
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA