1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACTCGCAGTGGAACTTAGTAGTTCAACACCCAAATTTTGAAAACGTCTCTACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtatttgcttcaacttctgagtaagtttgacaattttaatgtgaaatattttggctaacgattaatcttttgcttcag
species | Oryza sativa |
transcript | LOC_Os03g30260.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAA ATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGGEST: gi|86505393|gb|CI148026.1|CI148026
genomic: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtattt ... tttgcttcagATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGG
EST: TTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAA ATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGGEST: gi|163925411|gb|EG711548.1|EG711548
genomic: TTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtattt ... tttgcttcagATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGG
EST: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAA ATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGGEST: gi|86501819|gb|CI144452.1|CI144452
genomic: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtattt ... tttgcttcagATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGG
EST: GTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAA ATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGGEST: gi|66926011|gb|CX112859.1|CX112859
genomic: GTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtattt ... tttgcttcagATGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATGG
EST: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAA ATTGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGAACTGCTTATGEST: gi|58681123|gb|CK069810.1|CK069810
genomic: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtattt ... tttgcttcagA-TGACACTGCAATGATGTGGGGTGTCAAGTACTACAACGACCTGCTTATG
EST: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAA ATGACACTGCAATGATGTGGGGTGTCAAGTACTACAA
genomic: TACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtattt ... tttgcttcagATGACACTGCAATGATGTGGGGTGTCAAGTACTACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTCGCAGTGGAACTTAGTAGTTCAACACCCAAATTTTGAAAACGTCTCTACTGTTTTCAGCTTCAACTACAAATCTTTGAACCCCTATGGAGTAATAAgtgagtatttgcttcaacttctgagtaagtttgacaattttaatgtgaaatattttggctaacgattaatcttttgcttcag
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