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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttttgtggaacagtgtttggttatctgatatagagttgtccaagttggttttttctacatgt...

Basic information

species Oryza sativa
transcript LOC_Os03g27350.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G173682_T01 (Zea mays), 5'ss of exon 4
CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttt-tgtggaacagtgtttggttatctgatat--agagttgtcc-aagttggttttttctacatgt---
|||||||||||||||   ||||||| |||   ||||  || ||||| || |||||||||||| | |||||||||||||| ||||||||| ||||||||||||||| | |       |||| |  |||||| |   | ||   | |||| |  || | || |||| ||  |  |||||  ||| ||| | |  ||  |||| | |   
CTGCTCAGCTTTGCTCCAATTTCAATAAAGGACAATGTACATGGTCACCTATTCTTTTGTTGATTCCTCTGGTTCTTGGCCTTGACAAAATTAATCCAAGgtaattagc-------taaattttcatgctctaggggctgcatatggatccatgctaggctatcagaatttaagagtcatcctaaggtaggcttacctacctataca

upper sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G410085_T01 (Zea mays), 5'ss of exon 4
CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttt-tgtggaacagtgtttg----gttatctga--tatagagttgtccaa-gttggttttttctacatgt
||||||||||||||| |||||||||||||   | ||| || ||||| || ||||||||||| || |||||||||||||| ||||||||| |||| |||||||||| | |       |||| |  |||||||||  | ||   |  ||||   |   ||    | || || |  | | ||||  ||| | |||    |||||||| |  
CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagc-------taaactttcatgctttgggggctgcataaggaaggatacatgctacgctacctaaattttggagtcatcctatgttacgcttttctaccta-

upper sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G442425_T01 (Zea mays), 5'ss of exon 4
CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttt-tgtggaacagtgtttg----gttatctga--tatagagttgtccaa-gttggttttttctacatgt
||||||||||||||| |||||||||||||   | ||| || ||||| || ||||||||||| || |||||||||||||| ||||||||| |||| |||||||||| | |       |||| |  |||||||||  | ||   |  ||||   |   ||    | |||||||  | | ||||  ||| | |||    |||||||| |  
CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagc-------taaactttcatgctttgggggctgcataaggaaggatacatgctacgctatctgaattttggagtcatcctatgttacgcttttctaccta-

upper sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G064212_T02 (Zea mays), 5'ss of exon 5
CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttt-tgtggaa----cagtgtttggttatctga--tatagagttgtccaa-gttggttttttctacatgt
||||||||||||||| |||||||||||||   | ||| || ||||| || ||||||||||| || |||||||||||||| ||||||||| |||| |||||||||| | |       |||| |  |||||||||  | ||   |  ||||    |  || |  | |||||||  | | ||||  ||| | |||    |||||||| |  
CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagc-------taaactttcatgctttgggggctgcataaggaaggatccatgctacgctatctgaattttggagtcatcctatgttacgcttttctaccta-

upper sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G458441_T01 (Zea mays), 5'ss of exon 5
CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttttgtggaacagtgtttg----gttatctga--tatagagttgtccaa-gttggttttttctacatgt
||||||||||||||| |||||||||||||   | ||| || ||||| || ||||||||||| || |||||||||||||| ||||||||| |||| |||||||||| | |       |||| |  |||||||||  |     |  ||||   |   ||    |||||||||  | | ||||  ||| | |||    |||||||| | |
CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagc-------taaactttcatgctttggggttgcataaggaaggatacatgctacgttatctgaattttggagtcatcctatgttacgcttttctacctat