1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattcctaacattcggtattaaccttgagttgctttgctattatgtttgttgtggactgcattgtatgcctctggtgcttgtgtaatcaacacaa...
species | Oryza sativa |
transcript | LOC_Os03g27260.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|33663295|gb|CF294262.1|CF294262
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|8858052|gb|AU095370.1|AU095370
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|313080801|gb|HO213598.1|HO213598
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|4881015|gb|AU065314.1|AU065314
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTANCGCAGAACCTTCACTACCAAGAACG GCAAGAANGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88217674|gb|CI217523.1|CI217523
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|4880957|gb|AU065256.1|AU065256
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: GTCCGCAAGTATGTTCAACACTTACCGCAGAACCTTCACTANCAAGAACG GCAAGAANGTTAGCAAGGGCTCCTAAGATCCAGAAGGCTTGTEST: gi|86509309|gb|CI151942.1|CI151942
genomic: GTCCGCAAGTATGT-CAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGG-CTCCTAAGATCCAGA-GGCTTGT
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86511400|gb|CI154033.1|CI154033
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|87008622|gb|CI315080.1|CI315080
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGGCTTGGTCACTCCCCTEST: gi|86526943|gb|CI167149.1|CI167149
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGA-GGCTT-GTCACTCCCCT
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86510871|gb|CI153504.1|CI153504
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88832993|gb|CI369883.1|CI369883
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: GAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|163928140|gb|EG713572.1|EG713572
genomic: GAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACC--AGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|89190134|gb|CI013701.1|CI013701
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88243712|gb|CI242834.1|CI242834
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: CACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88547433|gb|CI477724.1|CI477724
genomic: CACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: CCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86540551|gb|CI180757.1|CI180757
genomic: CCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88216343|gb|CI216192.1|CI216192
genomic: TGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88969853|gb|CI383355.1|CI383355
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: CACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88983654|gb|CI028800.1|CI028800
genomic: CACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: GTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|163926374|gb|EG711874.1|EG711874
genomic: GTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86544829|gb|CI185035.1|CI185035
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: ACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86492000|gb|CI134633.1|CI134633
genomic: ACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86546761|gb|CI186967.1|CI186967
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCGCCTGAEST: gi|24208800|gb|AU225827.1|AU225827
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88239364|gb|CI240526.1|CI240526
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88235660|gb|CI234862.1|CI234862
genomic: TGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88200458|gb|CI200308.1|CI200308
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|87032995|gb|CI187619.1|CI187619
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88479047|gb|CI416318.1|CI416318
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88199121|gb|CI198971.1|CI198971
genomic: TACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGGACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|86542487|gb|CI182693.1|CI182693
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|426790|gb|D22862.1|D22862
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|87033765|gb|CI188389.1|CI188389
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|163926782|gb|EG715070.1|EG715070
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACC--AGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88242642|gb|CI242491.1|CI242491
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGAEST: gi|88215117|gb|CI214966.1|CI214966
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
EST: TGTCCGCAAGTATGTCTACACTTACCGCAGAACCTTCACTACCAAGAACG GCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACACCCCTGA
genomic: TGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattc ... tttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGGGCATCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGgtgagcattcctaacattcggtattaaccttgagttgctttgctattatgtttgttgtggactgcattgtatgcctctggtgcttgtgtaatcaacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC