1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaacttcgttctttttccttttttctgcaggatgtcttcttatatcttatatgatcactcatttgctcatctttttccttctatttgtttcatcag
species | Oryza sativa |
transcript | LOC_Os03g21720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG ATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATAEST: gi|157650097|gb|EX449731.1|EX449731
genomic: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaac ... gtttcatcagATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
EST: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG ATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATAEST: gi|29665176|gb|CB661451.1|CB661451
genomic: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaac ... gtttcatcagATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
EST: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG ATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATAEST: gi|29684200|gb|CB680475.1|CB680475
genomic: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaac ... gtttcatcagATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
EST: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG ATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATAEST: gi|58692052|gb|CK080739.1|CK080739
genomic: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaac ... gtttcatcagATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
EST: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG ATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATAEST: gi|55411780|gb|CV724156.1|CV724156
genomic: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaac ... gtttcatcagATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
EST: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG ATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
genomic: CTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaac ... gtttcatcagATGTTCAAACAAATGAGTGTTTGGAAAATAACGGAGGTTGCTGGCAAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGGgtctgtaaacttcgttctttttccttttttctgcaggatgtcttcttatatcttatatgatcactcatttgctcatctttttccttctatttgtttcatcag
- - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA