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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTGTTATCTGCTGCCGTGTTGCTCCACTACAAAAGGCTGGAATTGTTGATTTGATTAAAAGCAGAACAAGTGACATGACCCTGGCAATTGGTGATGgtgagattattttcgtctgattttagttttgtgatgctggtatttgacatctcatatttttgttgacatactcatttgtcattgttgtcctgtttgtaat...

Basic information

species Oryza sativa
transcript LOC_Os03g21680.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G398288_T01 (Zea mays), 5'ss of exon 4
AAAGTTGTTATCTGCTGCCGTGTTGCTCCACTACAAAAGGCTGGAATTGTTGATTTGATTAAAAGCAGAACAAGTGACATGACCCTGGCAATTGGTGATGgtgagattattttcgtctgattttagttttgtgatgctggtatttgacatctcatatttttgttgacatactcatttgtcattgttgtcctgtttg-taat------
||||| || || || |||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    |   ||||||| |    |||  | | | |||  | |  | |     || |||   |  ||  |    || |||   |  | | || ||||      
AAAGTCGTCATTTGTTGCCGTGTTGCTCCTCTGCAAAAGGCTGGTATTGTTGATTTGATTAAAAGCAGAACGAGTGACATGACCCTGGCAATTGGTGACGgtgagat--actcaatctgattct----ttgcta-gttagtacatcatgtttttatattctgtctgctgaccaaccgatcgttgaaattttatatgctaattattaa

upper sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 7
AAAGTTGTTATCTGCTGCCGTGTTGCTCCACTACAAAAGGCTGGAATTGTTGATTTGATTAAAAGCAGAACAAGTGACATGACCCTGGCAATTGGTGATGgtgagattattttcgtctgattttagttttgtgatgctggtatttgacatctcatatttttgttgac-----atactcatttgtcattgttgtcctgtttgtaat-------------------------------------------------------------------------------
|  |||||  | || || || ||||| ||  | |||||||| ||||||||||||||||| || ||| | |||  ||| ||||| ||||| || ||||||||| || |  || |  | |||  ||    ||    |||   |   ||   |         | |||||      ||| | |||||| || |  |||| |  |  |                                                                                 
AGGGTTGTGCTGTGTTGTCGAGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGATGgtaagttatttataatatgaaattgcacttaatttgcatttgggtgttgttgtgaggcctggttgatggttgatagtaatttgt-atggcagtccaggcttcagctagtgtttccagatggattttgatgtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacag

upper sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA09G41040.1 (Glycine max), 5'ss of exon 8
AAAGTTGTTATCTGCTGCCGTGTTGCTCCACTACAAAAGGCTGGAATTGTTGATTTGATTAAAAGCAGAACAAGTGACATGACCCTGGCAATTGGTGATGgtgagattattttcgtctgattttagttttgtgatgctggtatttgacatctcatatttttgttgacatactcatttgtcattgttgtcctgtttgtaat---------------------------------------------------------------------------------
|  |||||  | || || || ||||| ||  | |||||||| ||||||||||||||||| || ||| | |||  ||| ||||| ||||| || ||||||||| ||||  || |  | |||  ||    ||    |||   |   ||   |         | |||||  || | ||||| ||| |  |||| |  |  |                                                                                   
AGGGTTGTGCTGTGTTGTCGAGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGATGgtaagatatttgtaatatgaaattgaacttaatttgcatttgggtgttcttgtgaggcctggttga--tagtaatttg-catggcagtccaggcttcagatagtgttgccagatggattttgatataagatttgatttaatatgaacttaatcttttttttatctcgattacatttgacag