1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTGAAAGACCACTGCAGAAACATGGTGGAAGACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAGgtaccttgtacacttctctaataccattatgttgagtttgcctatttttattaatgtaactatttatgtatttacacctatattatttgcaacactaatttttatccttcctcttccattgaaattgtaagaaaaactaatattgtttttattaattcatcag
species | Oryza sativa |
transcript | LOC_Os03g20520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAG TCAGATGATCAGTGCTGTAACTCCTGTGAAGACGTCCGTGATGCCTATCGGEST: gi|33796334|gb|CF324034.1|CF324034
genomic: GACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAGgtaccttgta ... aattcatcagTCAGATGATCAGTGCTGTAACTCCTGTGAAGACGTCCGTGATGCCTATCGG
EST: GACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAG TCAGATGATCAGTGCTGTAACTCCTGTGAAGACGTCCGTGATGCCTATCGGEST: gi|325493955|gb|JG458479.1|JG458479
genomic: GACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAGgtaccttgta ... aattcatcagTCAGATGATCAGTGCTGTAACTCCTGTGAAGACGTCCGTGATGCCTATCGG
EST: GACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAG TCAGATGATCAGTGCTGT
genomic: GACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAGgtaccttgta ... aattcatcagTCAGATGATCAGTGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAAAGACCACTGCAGAAACATGGTGGAAGACTTGACCACAACGAAGTTTACTGTGGATCTTGTTATGGTTCTGAAGAGgtaccttgtacacttctctaataccattatgttgagtttgcctatttttattaatgtaactatttatgtatttacacctatattatttgcaacactaatttttatccttcctcttccattgaaattgtaagaaaaactaatattgtttttattaattcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA