1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTTACGCCGGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataaccacaactttttgtcatattacctgtccttttttggacaatggaattatgacttctggtctccgcaccaactaaggatgcacatccatatt...
species | Oryza sativa |
transcript | LOC_Os03g20310.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAG GCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAGEST: gi|58592490|gb|CF990798.1|CF990798
genomic: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataac ... ccttttcaagGCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAG
EST: GGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAG GCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAGEST: gi|29658760|gb|CB655035.1|CB655035
genomic: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataac ... ccttttcaagGCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAG
EST: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAG GCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAGEST: gi|5803454|gb|AI978424.1|AI978424
genomic: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataac ... ccttttcaagGCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAG
EST: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGNNAAAAANN NCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTEST: gi|58591209|gb|CF989517.1|CF989517
genomic: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataac ... ccttttcaagGCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACT
EST: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAACAAG GCATATGTACAACAATTAGAGAGCAGTEST: gi|29658674|gb|CB654949.1|CB654949
genomic: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataac ... ccttttcaagGCATATGTACAACAATTAGAGAGCAGT
EST: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAG GCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataac ... ccttttcaagGCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTACGCCGGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgtactataaccacaactttttgtcatattacctgtccttttttggacaatggaattatgacttctggtctccgcaccaactaaggatgcacatccatatt
- - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGAAA