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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGgttagtgatgattcactccataatttagtacatactattttcctgggtatttgagtcattatggctgttatctttgagaaaatctttatggttgttctct...

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G047894_T04 (Zea mays), 5'ss of exon 5
CTTGCAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGgttagtgatgattcactccataatttagtaca---tact---attttcctgggtatttgagtcattatggctgttatctttgagaaa-atctttatggttgttctct
||||||||||||||| |||||| |||||||| |||||||||| ||||| ||||| |||||| ||||| |||       | || |    ||   ||||   || ||  ||| |   | |||  ||  | |||||  |  | ||| | |   || |   |       
CTTGCAGAGGGCATCCAAGTTGGCTGCTGGGAGGGTACATAAACCACTATGGAAGCAGgttcgtgattatttgtcatttgatatgtcccacggtactcaaatctttgtggcttagttagttttttagcctgttggcagttagatacacacttctacat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88298501|gb|CI563496.1|CI563496
EST:     CATCAAAAGTTGCCTGCTGGGCGGGTACATAAGCCAACTCTGGNAAACAG                         GCTGACCCACGTTTCGGTTTGGAAC
genomic: CATCAAA-GTTGCCTGCTGGGCGGGTACATAAGCCA-CTCTGG-AAACAGgttagtgatg ... tatatttcagGCTGACCCACGTTTCG-TTTGGAAC
EST: gi|117222519|gb|CT845898.1|CT845898
EST:     GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAG                         GCTGACCCACGTTTTGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA
genomic: GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGgttagtgatg ... tatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA
EST: gi|29624693|gb|CB629704.1|CB629704
EST:     GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAG                         GCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA
genomic: GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGgttagtgatg ... tatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA