1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGAGACTGCAAGGCTGGTGACTGGAAGAACAAATGTTACCGTTGTGGAGAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattgataccgttggtcagatacactgtagcactctgttctaaggtactatgtttgaattactcaagacttctccaatacgtacttggttttccag
species | Oryza sativa |
transcript | LOC_Os03g17710.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAG GCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCAEST: gi|58653740|gb|CK042420.1|CK042420
genomic: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattg ... ggttttccagGCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCA
EST: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAG GCGAGAGAGAAGTTATTCGCGCTCCCCATEST: gi|4880966|gb|AU065265.1|AU065265
genomic: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattg ... ggttttccagGCGAGAGAGAAGTTATTCGCGCTCCCCAT
EST: GAAACNGCCAAAACAGTCCAAGAAATCTCAG GCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCAEST: gi|58674796|gb|CK063483.1|CK063483
genomic: GAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattg ... ggttttccagGCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCA
EST: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAG GCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCAEST: gi|117220967|gb|CT861417.1|CT861417
genomic: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattg ... ggttttccagGCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCA
EST: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAG GCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCAEST: gi|218481184|gb|FG968534.1|FG968534
genomic: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattg ... ggttttccagGCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCA
EST: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAG GCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCA
genomic: GAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattg ... ggttttccagGCGAGAGAGAAGTTATTCGCGCTCCCCATCGCCACGCCGTGGACGTGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGAGACTGCAAGGCTGGTGACTGGAAGAACAAATGTTACCGTTGTGGAGAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattgattgataccgttggtcagatacactgtagcactctgttctaaggtactatgtttgaattactcaagacttctccaatacgtacttggttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA