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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTATAAGTTGGCTCAAGAAATTTATGAGGAAATTAAGAAAAAGGAACAGAACGGTCTTTTAAAGTTAGATGTTTTTACATACAGTACAATGATGAAGgtatggagctccagttattgttttccataagttttgctgcctttttatggtttccagaattcttctctcttttaaattccag

Basic information

species Oryza sativa
transcript LOC_Os03g17634.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17634.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G092123_T01 (Zea mays), 5'ss of exon 5
GGAGTATAAGTTGGCTCAAGAAATTTATGAGGAAATTAAGAAAAAGGAACAGAACGGTCTTTTAAAGTTAGATGTTTTTACATACAGTACAATGATGAAGgtatggagctccagttattgttttccataagttttgctgcctttttatggtttccagaattcttctctcttttaaattccag
 || |  || |||||||||||||||||||||||||| |||||||||||||   | || ||||||||| |||||||||| ||||| ||||||||||||||||||||| |   |  || ||||| |||||   || ||    |||||||||||||||||||||||| ||||||| |||||||||
AGAATTCAACTTGGCTCAAGAAATTTATGAGGAAATGAAGAAAAAGGAACGTGATGGCCTTTTAAAGCTAGATGTTTTCACATATAGTACAATGATGAAGgtatgggggctc--ttgttgttgtccatgcattatgg---ctttttatggtttccagaattcttttctcttt-aaattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86905403|gb|CI285366.1|CI285366
EST:     AGAACGGTCTTTTAAAGTTAGATGTTTTTACATACAGTACAATGATGAAG                         GTGTTTGCAGATGCAAAAATGTGGAAGCTGGCTTCCGACATCAAACAGGAT
genomic: AGAACGGTCTTTTAAAGTTAGATGTTTTTACATACAGTACAATGATGAAGgtatggagct ... taaattccagGTGTTTGCAGATGCAAAAATGTGGAAGCTGGCTTCCGACATCAAACAGGAT