1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
species | Oryza sativa |
transcript | LOC_Os03g16980.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|58659240|gb|CK047920.1|CK047920
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|38478163|gb|CF962296.1|CF962296
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: CAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCTGCTTGAGCACCEST: gi|313080404|gb|HO213412.1|HO213412
genomic: CAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC-GCTTGAGCACC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|33675428|gb|CF303667.1|CF303667
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|428184|gb|D24332.1|D24332
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGNGCACCCEST: gi|30229035|gb|CB966926.1|CB966926
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|30228342|gb|CB966233.1|CB966233
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|29668646|gb|CB664921.1|CB664921
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|58672962|gb|CK061648.1|CK061648
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|33680606|gb|CF308845.1|CF308845
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|58590735|gb|CF989043.1|CF989043
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAA-ATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|33380802|gb|CF196145.1|CF196145
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|58656016|gb|CK044696.1|CK044696
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|58659773|gb|CK048453.1|CK048453
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCEST: gi|30226636|gb|CB964528.1|CB964528
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT