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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGTAAATCTTGATCGGCATGCAACCACCGAGGATGCATTCCAAGATGGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGTgtaagctaacctgtgcccattccttcaatcctgtgttttgctaattctgctttggtgctcacagcttctatatcttatttcattttcactccag

Basic information

species Oryza sativa
transcript LOC_Os03g15780.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g15780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G161337_T02 (Zea mays), 5'ss of exon 4
ATTGGGTAAATCTTGATCGGCATGCAACCACCGAGGATGCATTCCAAGATGGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGTgtaagctaacctgtgcccattccttcaatcctgtgttttgctaattctgctttggtgctcacagcttctatatcttatttcattttcactccag
||||||| ||| | || ||||||||| |    ||||| |||| ||||||||||| |||||| || ||| ||||||||||||||||||||||||| |||||||||||||  |||      ||| ||| ||||||       |||||  | |||||    |  ||   ||  |    |||||  |||  | | |||
ATTGGGTCAATGTGGACCGGCATGCATCTGTTGAGGAAGCATACCAAGATGGCAGGTCCCGACTAAACATGTTGCTATCTAAAGTGCACAATTCCAATGTgtaagctatgctgcctattttcattcgatcctg-------ctaat--tactttg----tttcattctcattgatctatttgctttggatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38565724|gb|CK085177.1|CK085177
EST:     GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGT                         ACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTAC
genomic: GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGTgtaagctaac ... ttcactccagACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTAC
EST: gi|88360057|gb|CI610171.1|CI610171
EST:     GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGT                         ACCCAAGCTTTCTCCAGG
genomic: GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGTgtaagctaac ... ttcactccagACCCAAGCTTTCTCCAGG