1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCTTCTCACTCGTGGCCTTCCACTCCGTATTATTATGGTTGGTACTCTTACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacatcatggacagttcgatttttgtattgtgatgcctaccagttatttatgaatcataagcgtttgtgaattcaatctccag
species | Oryza sativa |
transcript | LOC_Os03g15690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|89162381|gb|CI104709.1|CI104709
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|27545965|gb|CA764182.2|CA764182
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|29656500|gb|CB652775.1|CB652775
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|109713103|gb|CI105711.1|CI105711
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|38480172|gb|CF964261.1|CF964261
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATGCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|86254943|gb|CI017063.1|CI017063
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCAEST: gi|86413652|gb|CI019237.1|CI019237
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
EST: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACT GCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
genomic: ACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacat ... caatctccagGCCAACATCTGGTGGATTCATTCCTAGTCCTGCTGCCACCGATTTGCGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTCTCACTCGTGGCCTTCCACTCCGTATTATTATGGTTGGTACTCTTACTGGAGCTCAATGGGCAACATATGATGCATTTAAAGTCTTTGTTGGACTgtaagtacatcatggacagttcgatttttgtattgtgatgcctaccagttatttatgaatcataagcgtttgtgaattcaatctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA